RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780509|ref|YP_003064922.1| hypothetical protein
CLIBASIA_01980 [Candidatus Liberibacter asiaticus str. psy62]
         (112 letters)



>3h6e_A Carbohydrate kinase, FGGY; novosphingobium
           aromaticivorans,strain DSM 12444, SGX, transferase,
           structural genomics; 2.50A {Novosphingobium
           aromaticivorans DSM12444} (A:247-482)
          Length = 236

 Score = 26.8 bits (58), Expect = 0.97
 Identities = 7/46 (15%), Positives = 10/46 (21%), Gaps = 2/46 (4%)

Query: 55  LQGIMFQYF--IKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98
                      +  I     +   G     D +   LA    D  V
Sbjct: 125 CLYAALVADTALDLIGSTGRILVEGRFAEADVFVRALASLRPDCAV 170


>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase;
          1.85A {Human herpesvirus 8 type M} (A:58-132)
          Length = 75

 Score = 26.7 bits (59), Expect = 1.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 28 SFQSFLQLKDVQEACDKSKSVPEM 51
          SF  FL+   V++ C ++K  P M
Sbjct: 1  SFSKFLKHAKVRDWCAQAKIQPSM 24


>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar
           kinase, crsytal structure, structural genomics, protein
           structure initiative; HET: 5RP; 2.31A {Bacillus
           halodurans} (A:279-473)
          Length = 195

 Score = 26.4 bits (57), Expect = 1.5
 Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 8/51 (15%)

Query: 56  QGIMFQYFI-------KSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
           +   F           + +   E     G         +I A ++++  +K
Sbjct: 142 EATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFA-DVTNREIK 191


>2oxg_Y SOXY protein; immunoglobulin-like beta-sandwich fold,
           transport protein; 1.40A {Paracoccus denitrificans} PDB:
           2oxh_Y* 2ox5_Y* (Y:)
          Length = 124

 Score = 25.8 bits (57), Expect = 1.8
 Identities = 7/31 (22%), Positives = 10/31 (32%)

Query: 80  FNGDFWQEILAENISDVIVKQQRITLDLPEI 110
                  E+ A         +  +TL  PEI
Sbjct: 10  HGSSTVDELTAAFTGGAATGEGGLTLTAPEI 40


>2w45_A Nuclease, alkaline exonuclease; endonuclease,
          gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase,
          epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB:
          2w4b_A (A:1-94)
          Length = 94

 Score = 25.9 bits (57), Expect = 1.9
 Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 9  ISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEM 51
          ++    +   + +++    +F  FL+  + +         P+M
Sbjct: 1  MADVDELEDPMEEMTS--YTFARFLRSPETEAFVRNLDRPPQM 41


>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water-
           soluble monomer, beta-prism, beta-trefoil; HET: BOG;
           2.30A {Vibrio cholerae} (A:1-268,A:330-460)
          Length = 399

 Score = 24.9 bits (54), Expect = 4.3
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%)

Query: 80  FNGDFWQE------ILAENISDVIVKQQRITLDLPEIS 111
           +N   WQ        LAE    VI +Q+R+ +D  +IS
Sbjct: 30  YNAADWQAEDNALPSLAELRDLVINQQKRVLVDFSQIS 67


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 758,597
Number of extensions: 28215
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 9
Length of query: 112
Length of database: 4,956,049
Length adjustment: 67
Effective length of query: 45
Effective length of database: 2,691,114
Effective search space: 121100130
Effective search space used: 121100130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.7 bits)