RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780509|ref|YP_003064922.1| hypothetical protein CLIBASIA_01980 [Candidatus Liberibacter asiaticus str. psy62] (112 letters) >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain DSM 12444, SGX, transferase, structural genomics; 2.50A {Novosphingobium aromaticivorans DSM12444} (A:247-482) Length = 236 Score = 26.8 bits (58), Expect = 0.97 Identities = 7/46 (15%), Positives = 10/46 (21%), Gaps = 2/46 (4%) Query: 55 LQGIMFQYF--IKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98 + I + G D + LA D V Sbjct: 125 CLYAALVADTALDLIGSTGRILVEGRFAEADVFVRALASLRPDCAV 170 >3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} (A:58-132) Length = 75 Score = 26.7 bits (59), Expect = 1.0 Identities = 9/24 (37%), Positives = 14/24 (58%) Query: 28 SFQSFLQLKDVQEACDKSKSVPEM 51 SF FL+ V++ C ++K P M Sbjct: 1 SFSKFLKHAKVRDWCAQAKIQPSM 24 >3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} (A:279-473) Length = 195 Score = 26.4 bits (57), Expect = 1.5 Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 8/51 (15%) Query: 56 QGIMFQYFI-------KSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99 + F + + E G +I A ++++ +K Sbjct: 142 EATAFGTRAIVDAFHGRGVEVHELYACGGLPQKNHLLMQIFA-DVTNREIK 191 >2oxg_Y SOXY protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2oxh_Y* 2ox5_Y* (Y:) Length = 124 Score = 25.8 bits (57), Expect = 1.8 Identities = 7/31 (22%), Positives = 10/31 (32%) Query: 80 FNGDFWQEILAENISDVIVKQQRITLDLPEI 110 E+ A + +TL PEI Sbjct: 10 HGSSTVDELTAAFTGGAATGEGGLTLTAPEI 40 >2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A (A:1-94) Length = 94 Score = 25.9 bits (57), Expect = 1.9 Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 2/43 (4%) Query: 9 ISHSQSMGGNLAKISQDDSSFQSFLQLKDVQEACDKSKSVPEM 51 ++ + + +++ +F FL+ + + P+M Sbjct: 1 MADVDELEDPMEEMTS--YTFARFLRSPETEAFVRNLDRPPQM 41 >1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A {Vibrio cholerae} (A:1-268,A:330-460) Length = 399 Score = 24.9 bits (54), Expect = 4.3 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%) Query: 80 FNGDFWQE------ILAENISDVIVKQQRITLDLPEIS 111 +N WQ LAE VI +Q+R+ +D +IS Sbjct: 30 YNAADWQAEDNALPSLAELRDLVINQQKRVLVDFSQIS 67 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.315 0.132 0.363 Gapped Lambda K H 0.267 0.0450 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 758,597 Number of extensions: 28215 Number of successful extensions: 94 Number of sequences better than 10.0: 1 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 9 Length of query: 112 Length of database: 4,956,049 Length adjustment: 67 Effective length of query: 45 Effective length of database: 2,691,114 Effective search space: 121100130 Effective search space used: 121100130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.7 bits)