RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780509|ref|YP_003064922.1| hypothetical protein CLIBASIA_01980 [Candidatus Liberibacter asiaticus str. psy62] (112 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 34.1 bits (78), Expect = 0.008 Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 38/126 (30%) Query: 5 PISNISHSQSMGGNLA-KISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQG------ 57 P++ +SH G+L + +SF QL++ +K +PE T+ Sbjct: 8 PLT-LSH-----GSLEHVLLVPTASFFIASQLQE-----QFNKILPEPTEGFAADDEPTT 56 Query: 58 -----IMFQYFIKSILPEET-------VKSLGGGFNGDFWQ--EI---LAENISD---VI 97 F ++ S++ + F + + +I A+ + + + Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116 Query: 98 VKQQRI 103 VK + + Sbjct: 117 VKTKEL 122 Score = 29.1 bits (65), Expect = 0.27 Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 28/81 (34%) Query: 13 QSMGGNLAKISQDDSSFQSFLQLK-DVQEACDKSKSVPE---------------MTQKLQ 56 + L+++ + + ++ E + + P+ + Q Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--- 245 Query: 57 GIMFQYFIKSILPEETVKSLG 77 + Y + T K LG Sbjct: 246 --LAHYVV-------TAKLLG 257 >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495 Score = 28.3 bits (62), Expect = 0.47 Identities = 7/49 (14%), Positives = 23/49 (46%), Gaps = 1/49 (2%) Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98 + +++ ++ ++ + + +K+ GG + +I A ++ V V Sbjct: 379 GVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQA-DLLGVPV 426 >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 Score = 28.0 bits (61), Expect = 0.48 Identities = 4/42 (9%), Positives = 13/42 (30%), Gaps = 6/42 (14%) Query: 55 LQGIMFQY------FIKSILPEETVKSLGGGFNGDFWQEILA 90 ++G++ + +GGG + + + Sbjct: 404 VEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAP 445 >3gbt_A Gluconate kinase; LBA0354, FGGY kinase family, carbohydrate metabolic process, transferase, structural genomics, PSI-2; 2.40A {Lactobacillus acidophilus ncfm} Length = 504 Score = 27.4 bits (59), Expect = 0.88 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 59 MFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98 IK+ + + GG DF +++ A NI +V + Sbjct: 383 AASNLIKNTKKPVAINATGGFLKSDFVRQLCA-NIFNVPI 421 >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504 Score = 27.0 bits (59), Expect = 0.98 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Query: 59 MFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98 IK+ + + GG DF +++ A NI +V + Sbjct: 383 AASNLIKNTKKPVAINATGGFLKSDFVRQLCA-NIFNVPI 421 >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554 Score = 26.9 bits (58), Expect = 1.1 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 7/50 (14%) Query: 55 LQGIMFQY------FIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98 +Q + ++ +T+ + GGG + + A N + + Sbjct: 422 IQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHA-NATGCAM 470 >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain DSM 12444, SGX, transferase, structural genomics; 2.50A {Novosphingobium aromaticivorans DSM12444} Length = 482 Score = 26.8 bits (58), Expect = 1.1 Identities = 7/46 (15%), Positives = 10/46 (21%), Gaps = 2/46 (4%) Query: 55 LQGIMFQYF--IKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98 + I + G D + LA D V Sbjct: 371 CLYAALVADTALDLIGSTGRILVEGRFAEADVFVRALASLRPDCAV 416 >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 Score = 26.9 bits (58), Expect = 1.3 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Query: 59 MFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99 + ++V +GGG ++W+++LA +IS + Sbjct: 376 GMDVVHACGIKPQSVTLIGGGARSEYWRQMLA-DISGQQLD 415 >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, structural genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501 Score = 25.9 bits (56), Expect = 2.2 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 8/52 (15%) Query: 55 LQGIMFQYFI-------KSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99 L+ + +Q S + ++++ GG +F + A +I + V+ Sbjct: 383 LESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQA-DIVNTSVE 433 >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503 Score = 25.7 bits (55), Expect = 2.3 Identities = 3/30 (10%), Positives = 11/30 (36%), Gaps = 1/30 (3%) Query: 69 PEETVKSLGGGFNGDFWQEILAENISDVIV 98 ++ GG + + + +I + + Sbjct: 407 MLHVLRCDGGMTKNKPFMQFNS-DIINTKI 435 >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504 Score = 25.3 bits (54), Expect = 3.0 Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 1/36 (2%) Query: 69 PEETVKSLGGGFNGDFWQEILAENISDVIVKQQRIT 104 ++ GG + + A + V V + ++ Sbjct: 403 DLTELRVDGGMVANELLMQFQA-DQLGVDVVRPKVA 437 >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleotide-binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506 Score = 25.5 bits (55), Expect = 3.1 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%) Query: 69 PEETVKSLGGGFNGDFWQEILAENISDVIVK 99 +K GG D + A +I D+ V+ Sbjct: 403 DIPLLKVDGGAAKNDLLMQFQA-DILDIDVQ 432 >3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} Length = 508 Score = 25.3 bits (55), Expect = 3.6 Identities = 9/25 (36%), Positives = 14/25 (56%) Query: 27 SSFQSFLQLKDVQEACDKSKSVPEM 51 SF FL+ V++ C ++K P M Sbjct: 57 LSFSKFLKHAKVRDWCAQAKIQPSM 81 >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural genomics, transferase, PSI-2, protein structure initiative; 2.30A {Rhodospirillum rubrum atcc 11170} Length = 508 Score = 25.1 bits (53), Expect = 3.8 Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 1/41 (2%) Query: 59 MFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99 + + GG W I+A ++ V+ Sbjct: 390 HVAVLDDIGHAPQRFFASDGGTRSRVWMGIMA-DVLQRPVQ 429 >3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase, structural genomics, PSI-2, protein structure initiative; HET: ADP XUL; 1.65A {Chromobacterium violaceum} Length = 511 Score = 25.0 bits (53), Expect = 3.9 Identities = 6/20 (30%), Positives = 11/20 (55%) Query: 71 ETVKSLGGGFNGDFWQEILA 90 +K +GGG + W ++A Sbjct: 404 GLLKVVGGGARSEAWLRMIA 423 >2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4 c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* Length = 510 Score = 25.2 bits (54), Expect = 3.9 Identities = 5/36 (13%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 69 PEETVKSLGGGFNGDFWQEILAENISDVIVKQQRIT 104 ++ GG +F + + +I V++ + Sbjct: 401 RLHALRVDGGAVANNFLMQFQS-DILGTRVERPEVR 435 >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinase-HSP70- actin superfamily, L-rhamnulose kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489 Score = 25.0 bits (53), Expect = 4.3 Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 1/49 (2%) Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98 + ++ + + +GGG ++ A + + V Sbjct: 374 SLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCA-DACGIRV 421 >2oxg_Y SOXY protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2oxh_Y* 2ox5_Y* Length = 124 Score = 24.8 bits (54), Expect = 5.7 Identities = 7/26 (26%), Positives = 10/26 (38%) Query: 85 WQEILAENISDVIVKQQRITLDLPEI 110 E+ A + +TL PEI Sbjct: 15 VDELTAAFTGGAATGEGGLTLTAPEI 40 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.132 0.363 Gapped Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 876,673 Number of extensions: 34076 Number of successful extensions: 117 Number of sequences better than 10.0: 1 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 19 Length of query: 112 Length of database: 5,693,230 Length adjustment: 75 Effective length of query: 37 Effective length of database: 3,874,930 Effective search space: 143372410 Effective search space used: 143372410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.6 bits)