RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780509|ref|YP_003064922.1| hypothetical protein
CLIBASIA_01980 [Candidatus Liberibacter asiaticus str. psy62]
(112 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.1 bits (78), Expect = 0.008
Identities = 20/126 (15%), Positives = 45/126 (35%), Gaps = 38/126 (30%)
Query: 5 PISNISHSQSMGGNLA-KISQDDSSFQSFLQLKDVQEACDKSKSVPEMTQKLQG------ 57
P++ +SH G+L + +SF QL++ +K +PE T+
Sbjct: 8 PLT-LSH-----GSLEHVLLVPTASFFIASQLQE-----QFNKILPEPTEGFAADDEPTT 56
Query: 58 -----IMFQYFIKSILPEET-------VKSLGGGFNGDFWQ--EI---LAENISD---VI 97
F ++ S++ + F + + +I A+ + + +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 98 VKQQRI 103
VK + +
Sbjct: 117 VKTKEL 122
Score = 29.1 bits (65), Expect = 0.27
Identities = 9/81 (11%), Positives = 23/81 (28%), Gaps = 28/81 (34%)
Query: 13 QSMGGNLAKISQDDSSFQSFLQLK-DVQEACDKSKSVPE---------------MTQKLQ 56
+ L+++ + + ++ E + + P+ + Q
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--- 245
Query: 57 GIMFQYFIKSILPEETVKSLG 77
+ Y + T K LG
Sbjct: 246 --LAHYVV-------TAKLLG 257
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.80A {Thermus thermophilus}
Length = 495
Score = 28.3 bits (62), Expect = 0.47
Identities = 7/49 (14%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98
+ +++ ++ ++ + + +K+ GG + +I A ++ V V
Sbjct: 379 GVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQA-DLLGVPV 426
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 28.0 bits (61), Expect = 0.48
Identities = 4/42 (9%), Positives = 13/42 (30%), Gaps = 6/42 (14%)
Query: 55 LQGIMFQY------FIKSILPEETVKSLGGGFNGDFWQEILA 90
++G++ + +GGG + + +
Sbjct: 404 VEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAP 445
>3gbt_A Gluconate kinase; LBA0354, FGGY kinase family, carbohydrate
metabolic process, transferase, structural genomics,
PSI-2; 2.40A {Lactobacillus acidophilus ncfm}
Length = 504
Score = 27.4 bits (59), Expect = 0.88
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 59 MFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98
IK+ + + GG DF +++ A NI +V +
Sbjct: 383 AASNLIKNTKKPVAINATGGFLKSDFVRQLCA-NIFNVPI 421
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 27.0 bits (59), Expect = 0.98
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 59 MFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98
IK+ + + GG DF +++ A NI +V +
Sbjct: 383 AASNLIKNTKKPVAINATGGFLKSDFVRQLCA-NIFNVPI 421
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 26.9 bits (58), Expect = 1.1
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 55 LQGIMFQY------FIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98
+Q + ++ +T+ + GGG + + A N + +
Sbjct: 422 IQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHA-NATGCAM 470
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
DSM 12444, SGX, transferase, structural genomics; 2.50A
{Novosphingobium aromaticivorans DSM12444}
Length = 482
Score = 26.8 bits (58), Expect = 1.1
Identities = 7/46 (15%), Positives = 10/46 (21%), Gaps = 2/46 (4%)
Query: 55 LQGIMFQYF--IKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98
+ I + G D + LA D V
Sbjct: 371 CLYAALVADTALDLIGSTGRILVEGRFAEADVFVRALASLRPDCAV 416
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 26.9 bits (58), Expect = 1.3
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 59 MFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
+ ++V +GGG ++W+++LA +IS +
Sbjct: 376 GMDVVHACGIKPQSVTLIGGGARSEYWRQMLA-DISGQQLD 415
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism,
nucleotide-binding, transferase, structural genomics;
HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB:
3ge1_A*
Length = 501
Score = 25.9 bits (56), Expect = 2.2
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 55 LQGIMFQYFI-------KSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
L+ + +Q S + ++++ GG +F + A +I + V+
Sbjct: 383 LESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQA-DIVNTSVE 433
>2w40_A Glycerol kinase, putative; closed conformation, malaria,
transferase, sugar kinase/HSP70/actin superfamily, open
conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Length = 503
Score = 25.7 bits (55), Expect = 2.3
Identities = 3/30 (10%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 69 PEETVKSLGGGFNGDFWQEILAENISDVIV 98
++ GG + + + +I + +
Sbjct: 407 MLHVLRCDGGMTKNKPFMQFNS-DIINTKI 435
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif,
actin- like ATPase domain, transferase; 2.30A
{Cellulomonas SP}
Length = 504
Score = 25.3 bits (54), Expect = 3.0
Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 69 PEETVKSLGGGFNGDFWQEILAENISDVIVKQQRIT 104
++ GG + + A + V V + ++
Sbjct: 403 DLTELRVDGGMVANELLMQFQA-DQLGVDVVRPKVA 437
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism,
nucleotide-binding, phosphoprotein, transferase; 1.73A
{Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X
3h45_X 3d7e_O 1r59_O 1xup_O
Length = 506
Score = 25.5 bits (55), Expect = 3.1
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 69 PEETVKSLGGGFNGDFWQEILAENISDVIVK 99
+K GG D + A +I D+ V+
Sbjct: 403 DIPLLKVDGGAAKNDLLMQFQA-DILDIDVQ 432
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A
{Human herpesvirus 8 type M}
Length = 508
Score = 25.3 bits (55), Expect = 3.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 27 SSFQSFLQLKDVQEACDKSKSVPEM 51
SF FL+ V++ C ++K P M
Sbjct: 57 LSFSKFLKHAKVRDWCAQAKIQPSM 81
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural
genomics, transferase, PSI-2, protein structure
initiative; 2.30A {Rhodospirillum rubrum atcc 11170}
Length = 508
Score = 25.1 bits (53), Expect = 3.8
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 59 MFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIVK 99
+ + GG W I+A ++ V+
Sbjct: 390 HVAVLDDIGHAPQRFFASDGGTRSRVWMGIMA-DVLQRPVQ 429
>3hz6_A Xylulokinase; xylulose, structural genomic, manolate, transferase,
structural genomics, PSI-2, protein structure
initiative; HET: ADP XUL; 1.65A {Chromobacterium
violaceum}
Length = 511
Score = 25.0 bits (53), Expect = 3.9
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 71 ETVKSLGGGFNGDFWQEILA 90
+K +GGG + W ++A
Sbjct: 404 GLLKVVGGGARSEAWLRMIA 423
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation,
microfluidics,; 2.00A {Escherichia coli} SCOP: c.55.1.4
c.55.1.4 PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G*
1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y*
1gll_Y*
Length = 510
Score = 25.2 bits (54), Expect = 3.9
Identities = 5/36 (13%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 69 PEETVKSLGGGFNGDFWQEILAENISDVIVKQQRIT 104
++ GG +F + + +I V++ +
Sbjct: 401 RLHALRVDGGAVANNFLMQFQS-DILGTRVERPEVR 435
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinase-HSP70- actin superfamily, L-rhamnulose
kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB:
2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 25.0 bits (53), Expect = 4.3
Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 50 EMTQKLQGIMFQYFIKSILPEETVKSLGGGFNGDFWQEILAENISDVIV 98
+ ++ + + +GGG ++ A + + V
Sbjct: 374 SLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCA-DACGIRV 421
>2oxg_Y SOXY protein; immunoglobulin-like beta-sandwich fold, transport
protein; 1.40A {Paracoccus denitrificans} PDB: 2oxh_Y*
2ox5_Y*
Length = 124
Score = 24.8 bits (54), Expect = 5.7
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 85 WQEILAENISDVIVKQQRITLDLPEI 110
E+ A + +TL PEI
Sbjct: 15 VDELTAAFTGGAATGEGGLTLTAPEI 40
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.315 0.132 0.363
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 876,673
Number of extensions: 34076
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 19
Length of query: 112
Length of database: 5,693,230
Length adjustment: 75
Effective length of query: 37
Effective length of database: 3,874,930
Effective search space: 143372410
Effective search space used: 143372410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.6 bits)