Query gi|254780510|ref|YP_003064923.1| hypothetical protein CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 137
No_of_seqs 10 out of 12
Neff 2.4
Searched_HMMs 13730
Date Wed Jun 1 10:11:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780510.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ahme1 d.302.1.1 (E:43-197) N 56.3 2.5 0.00018 20.1 1.8 18 11-28 14-31 (155)
2 d1su3a1 a.20.1.2 (A:32-98) Fib 16.8 17 0.0012 14.2 0.5 23 58-80 2-24 (67)
3 d1eaka1 a.20.1.2 (A:32-107) Ge 16.0 21 0.0015 13.6 0.8 23 54-76 14-36 (76)
4 d1slma1 a.20.1.2 (A:16-80) Str 12.5 17 0.0012 14.2 -0.5 22 58-79 1-22 (65)
5 d1hu3a_ a.118.1.14 (A:) Eukary 12.0 35 0.0025 12.0 3.0 67 4-72 6-76 (243)
6 d1t98a1 a.4.5.65 (A:8-118) Chr 11.5 36 0.0026 11.9 1.0 16 112-127 66-81 (111)
7 d1e3oc2 a.35.1.1 (C:1-75) Oct- 9.9 41 0.003 11.5 0.8 57 27-85 12-69 (75)
8 d1tfua_ c.26.1.3 (A:) Phosphop 9.6 31 0.0022 12.4 0.0 22 48-69 7-31 (157)
9 d2g3ba2 a.121.1.1 (A:74-189) P 8.7 45 0.0033 11.2 2.1 51 15-70 3-53 (116)
10 d1kama_ c.26.1.3 (A:) Nicotina 8.6 46 0.0033 11.2 0.8 19 49-67 9-30 (189)
No 1
>d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS coronavirus [TaxId: 227859]}
Probab=56.28 E-value=2.5 Score=20.06 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998665799
Q gi|254780510|r 11 KIITAQCCIKSIAESNLA 28 (137)
Q Consensus 11 RLv~VQrhiErmAE~~LA 28 (137)
|=.+|||-||||||--.+
T Consensus 14 rd~avqrKLerMAe~Amt 31 (155)
T d2ahme1 14 RDAAMQRKLEKMADQAMT 31 (155)
T ss_dssp TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 778999999999999999
No 2
>d1su3a1 a.20.1.2 (A:32-98) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.79 E-value=17 Score=14.24 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98889999767767379887699
Q gi|254780510|r 58 LASHYLKFYHSLSQNDQKMASLQ 80 (137)
Q Consensus 58 fs~~Ya~r~~rLs~~Dqql~giQ 80 (137)
+++.|..+||-|...+.+...+.
T Consensus 2 l~~~YL~~fgyl~~~~~~~~~~~ 24 (67)
T d1su3a1 2 LVQKYLEKYYNLKNDGRQVEKRR 24 (67)
T ss_dssp HHHHHHHHHSCCC----------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89999998189998865322445
No 3
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.02 E-value=21 Score=13.58 Aligned_cols=23 Identities=17% Similarity=0.353 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67999888999976776737988
Q gi|254780510|r 54 MNPALASHYLKFYHSLSQNDQKM 76 (137)
Q Consensus 54 vh~afs~~Ya~r~~rLs~~Dqql 76 (137)
.+.-++.+|..+||-|......+
T Consensus 14 ~d~e~A~~YL~~fgyl~~~~~~~ 36 (76)
T d1eaka1 14 TDKELAVQYLNTFYGCPKESCNL 36 (76)
T ss_dssp CHHHHHHHHHHHHTCCCSSCCCH
T ss_pred CCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 43999999999957998677750
No 4
>d1slma1 a.20.1.2 (A:16-80) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=12.46 E-value=17 Score=14.22 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9888999976776737988769
Q gi|254780510|r 58 LASHYLKFYHSLSQNDQKMASL 79 (137)
Q Consensus 58 fs~~Ya~r~~rLs~~Dqql~gi 79 (137)
+++.|.++||-|...+......
T Consensus 1 l~~~YL~~fgyl~~~~~~~~~~ 22 (65)
T d1slma1 1 LVQKYLENYYDLKKDVKQFVRR 22 (65)
T ss_dssp CHHHHHHHHSCCCCC-------
T ss_pred CHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9799999808999874300245
No 5
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.97 E-value=35 Score=11.99 Aligned_cols=67 Identities=10% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 17899999999999999986657999999999999----9999999984111146799988899997677673
Q gi|254780510|r 4 RKSRALYKIITAQCCIKSIAESNLAYTISERKKIN----ILREKLKDSINSTALMNPALASHYLKFYHSLSQN 72 (137)
Q Consensus 4 ~rS~kLkRLv~VQrhiErmAE~~LAeT~rqR~ei~----~~~e~v~~ai~S~~pvh~afs~~Ya~r~~rLs~~ 72 (137)
.++++|+| .|+--|-|+.+.+......+=.++. ..++.+++.|-.-.-.-|.|+.-||+.+..|+..
T Consensus 6 ~~~~~l~r--~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~ 76 (243)
T d1hu3a_ 6 IKTQELFR--KVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTL 76 (243)
T ss_dssp HHHHHHHH--HHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC
T ss_pred HHHHHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 78999999--999998629999999999999998766899999999999999873863408999999999870
No 6
>d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF (KicB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.55 E-value=36 Score=11.90 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 2146889998887633
Q gi|254780510|r 112 YDDENNNDNIEQRILF 127 (137)
Q Consensus 112 adDn~v~D~Idq~~at 127 (137)
-..|+++|++.|++..
T Consensus 66 RANnAINdlv~QRlLn 81 (111)
T d1t98a1 66 RANNAINDMVRQRLLN 81 (111)
T ss_dssp HHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9888999999999999
No 7
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.90 E-value=41 Score=11.52 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=41.5
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999-99999999999999841111467999888999976776737988769999998
Q gi|254780510|r 27 LAYTIS-ERKKINILREKLKDSINSTALMNPALASHYLKFYHSLSQNDQKMASLQLVQEN 85 (137)
Q Consensus 27 LAeT~r-qR~ei~~~~e~v~~ai~S~~pvh~afs~~Ya~r~~rLs~~Dqql~giQqv~E~ 85 (137)
+|.+-+ .|..+.-++..|--|+|... .+.|||.--.||-+|..--.-|.-++-|-+.
T Consensus 12 Fa~~fk~rRi~LG~TQ~dVG~al~~l~--g~~~SQttIcRFE~l~LS~kn~~kLkP~L~~ 69 (75)
T d1e3oc2 12 FAKTFKQRRIKLGFTQGDVGLAMGKLY--GNDFSQTTISRFEALNLSFKNMSKLKPLLEK 69 (75)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH--SCCCCHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999878843655899999999871--7502588999999724579889988999999
No 8
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.55 E-value=31 Score=12.40 Aligned_cols=22 Identities=5% Similarity=-0.041 Sum_probs=11.9
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHH
Q ss_conf 411114679---9988899997677
Q gi|254780510|r 48 INSTALMNP---ALASHYLKFYHSL 69 (137)
Q Consensus 48 i~S~~pvh~---afs~~Ya~r~~rL 69 (137)
.||++|.|- ......+++|+.+
T Consensus 7 ~GsFdPiH~GHl~i~~~a~~~~d~~ 31 (157)
T d1tfua_ 7 PGSFDPVTLGHVDIFERAAAQFDEV 31 (157)
T ss_dssp EECCTTCCHHHHHHHHHHHHHSSEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCHH
T ss_conf 8478988789999999999845867
No 9
>d2g3ba2 a.121.1.1 (A:74-189) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=8.66 E-value=45 Score=11.19 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998665799999999999999999999841111467999888999976776
Q gi|254780510|r 15 AQCCIKSIAESNLAYTISERKKINILREKLKDSINSTALMNPALASHYLKFYHSLS 70 (137)
Q Consensus 15 VQrhiErmAE~~LAeT~rqR~ei~~~~e~v~~ai~S~~pvh~afs~~Ya~r~~rLs 70 (137)
.+..|+++-+.+|..+...|.+..+- -++-+..|-+|.+...+...|+++.
T Consensus 3 ~rdrL~~~i~~~l~~~~~~r~~~~vW-----~~~~a~A~~dp~~~~~~~~~~~~~~ 53 (116)
T d2g3ba2 3 ARDRLTRSLLGEIQDRPEVVENSLAW-----NELRASAVYEEALRDPLARTTAAWV 53 (116)
T ss_dssp HHHHHHHHHHHTSCSSHHHHHHHHHH-----HHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89999999997689850028999999-----9999997415688999999999999
No 10
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=8.58 E-value=46 Score=11.17 Aligned_cols=19 Identities=11% Similarity=-0.087 Sum_probs=12.8
Q ss_pred HHHHHHHH---HHHHHHHHHHH
Q ss_conf 11114679---99888999976
Q gi|254780510|r 49 NSTALMNP---ALASHYLKFYH 67 (137)
Q Consensus 49 ~S~~pvh~---afs~~Ya~r~~ 67 (137)
||++|.|. ......++.|+
T Consensus 9 GSFdP~H~GH~~ii~~a~~~~~ 30 (189)
T d1kama_ 9 GTFDPPHNGHLLMANEVLYQAG 30 (189)
T ss_dssp ECCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC
T ss_conf 3769898899999999999829
Done!