RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780510|ref|YP_003064923.1| hypothetical protein
CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62]
         (137 letters)



>gnl|CDD|36194 KOG0976, KOG0976, KOG0976, Rho/Rac1-interacting serine/threonine
           kinase Citron [Signal transduction mechanisms].
          Length = 1265

 Score = 26.2 bits (57), Expect = 3.0
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 36  KINILREKLKDSINSTALMNPALASHYLKFYHSLSQNDQKMASLQLVQENT--LLSEKIK 93
           ++N    + +  +        AL     KF   L + DQK   L   QENT  +L E ++
Sbjct: 177 ELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQ 236

Query: 94  I----DRLTEMKDETYLLEERQYDDENNNDNIEQR 124
           +      LT ++    ++EE+  D + +   IE++
Sbjct: 237 LSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEK 271


>gnl|CDD|143978 pfam00223, PsaA_PsaB, Photosystem I psaA/psaB protein. 
          Length = 682

 Score = 26.2 bits (58), Expect = 3.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 110 RQYDDENNNDNIEQRIL 126
           R YD E N +N+  R+L
Sbjct: 363 RDYDPEANKNNVLDRVL 379


>gnl|CDD|35539 KOG0318, KOG0318, KOG0318, WD40 repeat stress protein/actin
           interacting protein [Cytoskeleton].
          Length = 603

 Score = 26.0 bits (57), Expect = 3.3
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 6/95 (6%)

Query: 17  CCIKSIAESNLAYTISERKKINILREKLKDSINSTALMNPALASHYLKFYHSLSQNDQK- 75
             +  +++   A        I +L+++ K S       + A+A        ++   D K 
Sbjct: 409 KGLAVLSDGGTAVVACI-SDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKV 467

Query: 76  ----MASLQLVQENTLLSEKIKIDRLTEMKDETYL 106
               ++  +L +E  LL  +  I  +    D  YL
Sbjct: 468 HVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502


>gnl|CDD|39129 KOG3926, KOG3926, KOG3926, F-box proteins [Amino acid transport and
           metabolism].
          Length = 332

 Score = 24.6 bits (53), Expect = 8.9
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 22  IAESNLAY--TISERKKINILREKLKDSINSTALMNPALASHYLK-FYHSLSQNDQKMAS 78
           IA+S L      +++  +NIL + +   ++     NP L    L+   H L Q +QK   
Sbjct: 106 IAKSQLTSLSGSAQKNLLNILEKVVSKVLDDQ--QNPRLIRDLLQKLEHILCQLNQKCGK 163

Query: 79  LQLVQENTLLSEKIKIDRLTEMKDETYLLEERQYDDENNN 118
             LV    L  E     R+  +     +L + Q  + +  
Sbjct: 164 SVLVSNINLWKE-----RMETILRWQQVLSQIQITEPDPA 198


>gnl|CDD|30456 COG0107, HisF, Imidazoleglycerol-phosphate synthase [Amino acid
           transport and metabolism].
          Length = 256

 Score = 24.7 bits (54), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 45  KDSINSTALMNPAL 58
           K SINS A+ +P L
Sbjct: 99  KVSINSAAVKDPEL 112


>gnl|CDD|58534 cd04365, IlGF_relaxin_like, IlGF_like family, relaxin_like
          subgroup, specific to vertebrates. Members include a
          number of active peptides including (pro)relaxin,
          mammalian Leydig cell-specific insulin-like peptide
          (gene INSL3), early placenta insulin-like peptide
          (ELIP; gene INSL4), and insulin-like peptides 5 (INSL5)
          and 6 (INSL6). Members of this subgroup are widely
          expressed in testes (INSL3, INSL6), decidua, placenta,
          prostate, corpus luteum, brain (various relaxins), GI
          tract, and kidney (INSL5) where they serve a variety of
          functions in parturition and development. Typically,
          the active forms of these peptide hormones are composed
          of two chains (A and B) linked by two disulfide bonds;
          the arrangement of four cysteines is conserved in the
          "A" chain:  Cys1 is linked by a disulfide bond to Cys3,
          Cys2 and Cys4 are linked by interchain disulfide bonds
          to cysteines in the "B" chain. This alignment contains
          both chains, plus the intervening linker region,
          arranged as found in the propeptide form. Propeptides
          are cleaved to yield two separate chains linked
          covalently by the two disulfide bonds..
          Length = 59

 Score = 24.5 bits (53), Expect = 9.9
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 2  RSRKSRALYKIITAQCC 18
           SRK R   + ++ +CC
Sbjct: 30 HSRKKRQFSRGLSEKCC 46


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.128    0.335 

Gapped
Lambda     K      H
   0.267   0.0520    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,421,379
Number of extensions: 63213
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 27
Length of query: 137
Length of database: 6,263,737
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,448,581
Effective search space: 235774793
Effective search space used: 235774793
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)