RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780510|ref|YP_003064923.1| hypothetical protein
CLIBASIA_01985 [Candidatus Liberibacter asiaticus str. psy62]
         (137 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 32.7 bits (73), Expect = 0.026
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 11/31 (35%)

Query: 33 ERKKINILREKLK----DSINSTALMNPALA 59
          E++ +  L+  LK    DS    A   PALA
Sbjct: 18 EKQALKKLQASLKLYADDS----A---PALA 41



 Score = 25.3 bits (54), Expect = 4.9
 Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 71 QNDQKM-ASLQLVQENTLLSEKIK 93
          Q  +K+ ASL+L  +++  +  IK
Sbjct: 20 QALKKLQASLKLYADDSAPALAIK 43


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.5 bits (71), Expect = 0.072
 Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 42/149 (28%)

Query: 21  SIAESNLAYTISERKKINILREKLKDSINSTALMNPA--------------LASHYLKFY 66
           +++  +L + +        +  +L++  N   L  P               L   +L + 
Sbjct: 10  TLSHGSLEHVLLVPTASFFIASQLQEQFNKI-LPEPTEGFAADDEPTTPAELVGKFLGYV 68

Query: 67  -HSLSQNDQKMAS--LQLV-QE-----------NTLLSEKIKIDRLTEMKDETYLLEERQ 111
              +  +        L L   E           + L ++ ++ +  T +K +  +   + 
Sbjct: 69  SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI---KN 125

Query: 112 Y-------DDENNNDNIEQRILFNAVSRK 133
           Y             D      LF AV   
Sbjct: 126 YITARIMAKR--PFDKKSNSALFRAVGEG 152


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.128    0.335 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,019,970
Number of extensions: 40839
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 21
Length of query: 137
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 54
Effective length of database: 3,680,978
Effective search space: 198772812
Effective search space used: 198772812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)