HHsearch alignment for GI: 254780511 and conserved domain: COG1987

>COG1987 FliQ Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=94.90  E-value=0.22  Score=26.01  Aligned_cols=78  Identities=22%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999999999999999999999999999998533254899999999999999999999999999999999504
Q gi|254780511|r  169 SSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF  247 (248)
Q Consensus       169 ~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f~~~f  247 (248)
T Consensus         4 ~~~l~i~~~ai~~~L~l~~P~ll~alvvGLvIsif-QA~TQIqEqTLsFiPKIiai~~~l~~~gpWm~~~l~dft~~if   81 (89)
T COG1987           4 EDVLDIGQEAIWLVLMLSAPVLLVALVVGLVISIF-QAATQIQEQTLSFIPKIIAVFLVLILLGPWMLNQLLDFTVTIF   81 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999998999999999999999-9999999999985998999999999975899999999999999