HHsearch alignment for GI: 254780511 and conserved domain: PRK05700
>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated.
Probab=95.94 E-value=0.098 Score=28.14 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999999999998533254899999999999999999999999999999999504
Q gi|254780511|r 168 FSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 (248)
Q Consensus 168 ~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f~~~f 247 (248)
T Consensus 3 ~~~~i~l~~~al~~~l~ls~P~L~~alvVGl~Isi~-QA~TqIqEqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~if 81 (89)
T PRK05700 3 PESVMDLFREAMKVALMLAAPLLLVALIVGLVVSIF-QAATQINEQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTLF 81 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999999888999999999999999-9999999989987999999999999987899999999999999