HHsearch alignment for GI: 254780511 and conserved domain: PRK05701
>PRK05701 fliR flagellar biosynthesis protein FliR; Reviewed.
Probab=100.00 E-value=0 Score=392.46 Aligned_cols=242 Identities=30% Similarity=0.517 Sum_probs=230.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 83699999999999999999998552788862889999999999999952144456000122068999999999999999
Q gi|254780511|r 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83 (248)
Q Consensus 4 ~~~~~l~~f~li~~Ri~~~~~~~P~f~~~~iP~~vr~~l~l~ls~~~~p~v~~~~~~~~~~~~~~~~~l~l~E~~iGl~l 83 (248)
T Consensus 3 ~~~~~~~~fllv~~Rv~~~~~~~P~f~~~~vP~~vR~~lal~ls~~l~p~v~~~~~--~~~~~~~~~~~~~~E~~iGl~l 80 (250)
T PRK05701 3 QLLEWVAAFFLPFCRIGALLMTMPGFSERNIPARVKLGLALALTFAIAPLLPPVPQ--VDLFSLTALLLVLQEILIGLAL 80 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999997760777562999999999999999844877677--8851399999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999875422202688887530169999999999999994518999999999997555665568
Q gi|254780511|r 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN 163 (248)
Q Consensus 84 G~~~~i~f~a~~~AG~~id~q~Gls~a~~~dP~~~~~~~~~~~l~~~~~~~lF~~~ggh~~li~~l~~Sf~~iP~g~~~~ 163 (248)
T Consensus 81 G~~~~l~f~a~~~AG~~i~~q~G~s~a~~~DP~~~~q~~~~~~~~~~~~~~lF~~~~gh~~~l~~l~~Sf~~~P~g~~~~ 160 (250)
T PRK05701 81 GLVAQIIFAALQFAGQIIAMQMGLSFASMVDPTSGQQSPLLGQFLTLLALLLFLALDGHHLLIRALVDSFQTLPIGGFLL 160 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999999998754631324798777755389999999999999997719999999999987648987756
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57999999999999999999999999999999999999999853325489999999999999999999999999999999
Q gi|254780511|r 164 FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 (248)
Q Consensus 164 ~~~~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f 243 (248)
T Consensus 161 ~~~~~~~~~~~~~~~f~~al~lAaPi~~~~ll~~~~lG~l~R~~PQlnvf~vg~p~ki~~gl~~l~l~l~~l~~~~~~~f 240 (250)
T PRK05701 161 NGNAFLLLAKALSAMFLIGLQLALPIIVALLLVNLALGLLNRAAPQLNIFVIGFPLKITVGLLILALILPALLSVFENLF 240 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999999999999999899999999999999999707300089999779999999999999999999999999
Q ss_pred HHHC
Q ss_conf 9504
Q gi|254780511|r 244 LYGF 247 (248)
Q Consensus 244 ~~~f 247 (248)
T Consensus 241 ~~~~ 244 (250)
T PRK05701 241 SEAF 244 (250)
T ss_pred HHHH
T ss_conf 9999