HHsearch alignment for GI: 254780511 and conserved domain: PRK05701

>PRK05701 fliR flagellar biosynthesis protein FliR; Reviewed.
Probab=100.00  E-value=0  Score=392.46  Aligned_cols=242  Identities=30%  Similarity=0.517  Sum_probs=230.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             83699999999999999999998552788862889999999999999952144456000122068999999999999999
Q gi|254780511|r    4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH   83 (248)
Q Consensus         4 ~~~~~l~~f~li~~Ri~~~~~~~P~f~~~~iP~~vr~~l~l~ls~~~~p~v~~~~~~~~~~~~~~~~~l~l~E~~iGl~l   83 (248)
T Consensus         3 ~~~~~~~~fllv~~Rv~~~~~~~P~f~~~~vP~~vR~~lal~ls~~l~p~v~~~~~--~~~~~~~~~~~~~~E~~iGl~l   80 (250)
T PRK05701          3 QLLEWVAAFFLPFCRIGALLMTMPGFSERNIPARVKLGLALALTFAIAPLLPPVPQ--VDLFSLTALLLVLQEILIGLAL   80 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999999999999997760777562999999999999999844877677--8851399999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999999999999999875422202688887530169999999999999994518999999999997555665568
Q gi|254780511|r   84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN  163 (248)
Q Consensus        84 G~~~~i~f~a~~~AG~~id~q~Gls~a~~~dP~~~~~~~~~~~l~~~~~~~lF~~~ggh~~li~~l~~Sf~~iP~g~~~~  163 (248)
T Consensus        81 G~~~~l~f~a~~~AG~~i~~q~G~s~a~~~DP~~~~q~~~~~~~~~~~~~~lF~~~~gh~~~l~~l~~Sf~~~P~g~~~~  160 (250)
T PRK05701         81 GLVAQIIFAALQFAGQIIAMQMGLSFASMVDPTSGQQSPLLGQFLTLLALLLFLALDGHHLLIRALVDSFQTLPIGGFLL  160 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99999999999999999998754631324798777755389999999999999997719999999999987648987756


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57999999999999999999999999999999999999999853325489999999999999999999999999999999
Q gi|254780511|r  164 FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF  243 (248)
Q Consensus       164 ~~~~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f  243 (248)
T Consensus       161 ~~~~~~~~~~~~~~~f~~al~lAaPi~~~~ll~~~~lG~l~R~~PQlnvf~vg~p~ki~~gl~~l~l~l~~l~~~~~~~f  240 (250)
T PRK05701        161 NGNAFLLLAKALSAMFLIGLQLALPIIVALLLVNLALGLLNRAAPQLNIFVIGFPLKITVGLLILALILPALLSVFENLF  240 (250)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68999999999999999999999899999999999999999707300089999779999999999999999999999999


Q ss_pred             HHHC
Q ss_conf             9504
Q gi|254780511|r  244 LYGF  247 (248)
Q Consensus       244 ~~~f  247 (248)
T Consensus       241 ~~~~  244 (250)
T PRK05701        241 SEAF  244 (250)
T ss_pred             HHHH
T ss_conf             9999