HHsearch alignment for GI: 254780511 and conserved domain: PRK09617
>PRK09617 type III secretion system protein; Reviewed.
Probab=95.64 E-value=0.06 Score=29.39 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=48.7
Q ss_pred HHHHHH-HHHHCCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999-9975556655685------799999999999999999999999999999999999999985332548999999
Q gi|254780511|r 146 FYALVK-SYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP 218 (248)
Q Consensus 146 i~~l~~-Sf~~iP~g~~~~~------~~~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~p 218 (248)
T Consensus 204 l~~F~~~a~~~~p~~~~~~~~~~~l~vLiPAFvlSELktAFqIGFlIYLPFlVIDLVVAsV--LmAMGMMMlpP~~ISLP 281 (305)
T PRK09617 204 IQSFYKISQKTFPPEIRDALTPSDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANV--LVAMQMMMLSPLSISLP 281 (305)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCCHHHHHH
T ss_conf 9999998454488752235677873110579999999999999999999999999999999--99800210580465445
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780511|r 219 YLIGL 223 (248)
Q Consensus 219 iki~i 223 (248)
T Consensus 282 fKLLL 286 (305)
T PRK09617 282 LKLLL 286 (305)
T ss_pred HHHHH
T ss_conf 77778