HHsearch alignment for GI: 254780511 and conserved domain: PRK09617

>PRK09617 type III secretion system protein; Reviewed.
Probab=95.64  E-value=0.06  Score=29.39  Aligned_cols=76  Identities=20%  Similarity=0.161  Sum_probs=48.7

Q ss_pred             HHHHHH-HHHHCCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999-9975556655685------799999999999999999999999999999999999999985332548999999
Q gi|254780511|r  146 FYALVK-SYGTIPIGQELNF------GNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTP  218 (248)
Q Consensus       146 i~~l~~-Sf~~iP~g~~~~~------~~~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~p  218 (248)
T Consensus       204 l~~F~~~a~~~~p~~~~~~~~~~~l~vLiPAFvlSELktAFqIGFlIYLPFlVIDLVVAsV--LmAMGMMMlpP~~ISLP  281 (305)
T PRK09617        204 IQSFYKISQKTFPPEIRDALTPSDFVIIIPAFIMGQIKNAFEIGVLIYLPFFVIDLVTANV--LVAMQMMMLSPLSISLP  281 (305)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCCHHHHHH
T ss_conf             9999998454488752235677873110579999999999999999999999999999999--99800210580465445


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780511|r  219 YLIGL  223 (248)
Q Consensus       219 iki~i  223 (248)
T Consensus       282 fKLLL  286 (305)
T PRK09617        282 LKLLL  286 (305)
T ss_pred             HHHHH
T ss_conf             77778