HHsearch alignment for GI: 254780511 and conserved domain: PRK12772

>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional.
Probab=100.00  E-value=0  Score=400.15  Aligned_cols=241  Identities=19%  Similarity=0.348  Sum_probs=228.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             83699999999999999999998552788862889999999999999952144456000122068999999999999999
Q gi|254780511|r    4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH   83 (248)
Q Consensus         4 ~~~~~l~~f~li~~Ri~~~~~~~P~f~~~~iP~~vr~~l~l~ls~~~~p~v~~~~~~~~~~~~~~~~~l~l~E~~iGl~l   83 (248)
T Consensus         2 i~~~yflaf~Lvf~Risa~~~~aPiF~~~~iP~~vKi~lal~ls~~i~p~v~~~-~~~~~~~~~~~~l~vl~E~liGl~l   80 (609)
T PRK12772          2 ISAAYFTALILIFLRLFSFFSMVPIFFPKGTPVIVKVSLALIISYMLVGGIDIS-TVNTINNSTALIFYGINEILTGLIL   80 (609)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             756999999999999999999865418888859999999999999996568887-6555433599999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99999999999999999999875422202688887530169999999999999994518999999999997555665568
Q gi|254780511|r   84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN  163 (248)
Q Consensus        84 G~~~~i~f~a~~~AG~~id~q~Gls~a~~~dP~~~~~~~~~~~l~~~~~~~lF~~~ggh~~li~~l~~Sf~~iP~g~~~~  163 (248)
T Consensus        81 Gf~~~l~F~av~~AG~lI~~qmGlsmA~~~DP~~g~q~~vig~f~~lla~llFla~~GH~~li~al~~Sf~~iP~G~~~~  160 (609)
T PRK12772         81 GYITNLCFVCVRYAGSMMDLQVGFSMMSMFDPSSNSNTTLIERLLYWFSTVVFFIVDGHHMLIRALVESFNVIKLGAFFL  160 (609)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99999999999999999998764899980488778876489999999999999996769999999999731108996545


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57999999999999999999999999999999999999999853325489999999999999999999999999999999
Q gi|254780511|r  164 FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF  243 (248)
Q Consensus       164 ~~~~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f  243 (248)
T Consensus       161 ~~~~~~~~~~~~~~~F~~a~~iA~Pii~~lll~dv~lGilaR~~PQmNVF~vGfPlkIlvGl~~l~i~lP~~~~~~~~~~  240 (609)
T PRK12772        161 NQESIMHVINVFIQYFVIGIKIAIPIVLIILITDLTLGLISRTVPQLNIMILGLPIKILLGLTAFVIALPLILKVLGSAF  240 (609)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             52699999999999999999999999999999999999999813688799999789999999999999899999999998


Q ss_pred             HH
Q ss_conf             95
Q gi|254780511|r  244 LY  245 (248)
Q Consensus       244 ~~  245 (248)
T Consensus       241 ~~  242 (609)
T PRK12772        241 GN  242 (609)
T ss_pred             HH
T ss_conf             63