HHsearch alignment for GI: 254780511 and conserved domain: PRK12772
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional.
Probab=100.00 E-value=0 Score=400.15 Aligned_cols=241 Identities=19% Similarity=0.348 Sum_probs=228.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 83699999999999999999998552788862889999999999999952144456000122068999999999999999
Q gi|254780511|r 4 SPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVH 83 (248)
Q Consensus 4 ~~~~~l~~f~li~~Ri~~~~~~~P~f~~~~iP~~vr~~l~l~ls~~~~p~v~~~~~~~~~~~~~~~~~l~l~E~~iGl~l 83 (248)
T Consensus 2 i~~~yflaf~Lvf~Risa~~~~aPiF~~~~iP~~vKi~lal~ls~~i~p~v~~~-~~~~~~~~~~~~l~vl~E~liGl~l 80 (609)
T PRK12772 2 ISAAYFTALILIFLRLFSFFSMVPIFFPKGTPVIVKVSLALIISYMLVGGIDIS-TVNTINNSTALIFYGINEILTGLIL 80 (609)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 756999999999999999999865418888859999999999999996568887-6555433599999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999999999875422202688887530169999999999999994518999999999997555665568
Q gi|254780511|r 84 GLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN 163 (248)
Q Consensus 84 G~~~~i~f~a~~~AG~~id~q~Gls~a~~~dP~~~~~~~~~~~l~~~~~~~lF~~~ggh~~li~~l~~Sf~~iP~g~~~~ 163 (248)
T Consensus 81 Gf~~~l~F~av~~AG~lI~~qmGlsmA~~~DP~~g~q~~vig~f~~lla~llFla~~GH~~li~al~~Sf~~iP~G~~~~ 160 (609)
T PRK12772 81 GYITNLCFVCVRYAGSMMDLQVGFSMMSMFDPSSNSNTTLIERLLYWFSTVVFFIVDGHHMLIRALVESFNVIKLGAFFL 160 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999999999998764899980488778876489999999999999996769999999999731108996545
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57999999999999999999999999999999999999999853325489999999999999999999999999999999
Q gi|254780511|r 164 FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 (248)
Q Consensus 164 ~~~~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f 243 (248)
T Consensus 161 ~~~~~~~~~~~~~~~F~~a~~iA~Pii~~lll~dv~lGilaR~~PQmNVF~vGfPlkIlvGl~~l~i~lP~~~~~~~~~~ 240 (609)
T PRK12772 161 NQESIMHVINVFIQYFVIGIKIAIPIVLIILITDLTLGLISRTVPQLNIMILGLPIKILLGLTAFVIALPLILKVLGSAF 240 (609)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52699999999999999999999999999999999999999813688799999789999999999999899999999998
Q ss_pred HH
Q ss_conf 95
Q gi|254780511|r 244 LY 245 (248)
Q Consensus 244 ~~ 245 (248)
T Consensus 241 ~~ 242 (609)
T PRK12772 241 GN 242 (609)
T ss_pred HH
T ss_conf 63