HHsearch alignment for GI: 254780511 and conserved domain: PRK12797
>PRK12797 type III secretion system protein; Provisional.
Probab=95.45 E-value=0.15 Score=27.00 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999999998533254899999999999
Q gi|254780511|r 167 IFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGL 223 (248)
Q Consensus 167 ~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~i 223 (248)
T Consensus 142 iPAF~iSELk~AF~IGFliyLPFlvIDlVVasi--LmamGMmMlpP~~ISlPfKllL 196 (215)
T PRK12797 142 IPAFTLSELTRAFEIGFLLYLPFIVIDLVISNI--LLAMGMMMVSPTTISLPFKLLL 196 (215)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCCCHHCCHHHHHHHHHHHH
T ss_conf 079999999999999999999999999999999--9982010058268757788889