HHsearch alignment for GI: 254780511 and conserved domain: TIGR01400
>TIGR01400 fliR flagellar biosynthetic protein FliR; InterPro: IPR006303 These sequences represent the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT.; GO: 0015031 protein transport, 0016021 integral to membrane, 0019861 flagellum.
Probab=100.00 E-value=0 Score=384.53 Aligned_cols=237 Identities=28% Similarity=0.524 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998552788862889999999999999952144456000122068999999999999999999999
Q gi|254780511|r 10 MSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIRV 89 (248)
Q Consensus 10 ~~f~li~~Ri~~~~~~~P~f~~~~iP~~vr~~l~l~ls~~~~p~v~~~~~~~~~~~~~~~~~l~l~E~~iGl~lG~~~~i 89 (248)
T Consensus 2 ~~~~l~~~R~~a~l~~~P~fs~~~vP~~vR~~lal~~~~~~~p~l~~~~~-~~~~~~~~~~~~~~~E~l~G~~~G~~~~~ 80 (248)
T TIGR01400 2 STFFLVFVRVGAFLMTMPFFSERLVPVRVRLYLALALTFIVLPFLPPTPG-QVNLFSLFFVLLLLQEILIGLLIGFILQL 80 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56899999999999971664234054068999999999999845100345-20011799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHCCCCCCCCCH--H
Q ss_conf 9999999999999987542220268888753016999999999999999451899999-999999755566556857--9
Q gi|254780511|r 90 YTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFY-ALVKSYGTIPIGQELNFG--N 166 (248)
Q Consensus 90 ~f~a~~~AG~~id~q~Gls~a~~~dP~~~~~~~~~~~l~~~~~~~lF~~~ggh~~li~-~l~~Sf~~iP~g~~~~~~--~ 166 (248)
T Consensus 81 ~f~a~~~AG~~I~~~~GLg~A~~~dp~~~~~~p~~~~~l~~lall~FL~~~gh~~~i~~~l~~S~~~~P~g~~~~~~~e~ 160 (248)
T TIGR01400 81 LFAAFVLAGEIISFQMGLGFASMVDPSSGEQTPVLGQILYLLALLLFLALDGHHLLILIGLVDSFKSLPVGSFFLNGSEN 160 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 99999999999998898899876312356661289999999999999984648999999999776540367666786148
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999853325489999999999999999999999999999999950
Q gi|254780511|r 167 IFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYG 246 (248)
Q Consensus 167 ~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f~~~ 246 (248)
T Consensus 161 ~~~~~~~~~~~~F~~gl~~a~P~~~~lLl~nl~~G~~~R~~PQ~N~F~iG~Pl~~~~Gl~ll~~~~p~~~~~~~~~~~~~ 240 (248)
T TIGR01400 161 LFELILKALSDMFLLGLLLALPIIAALLLINLVLGLVNRAAPQLNIFSIGFPLKILLGLILLYLILPVIASLFKKLFEEL 240 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998799999999999999998775799999998559999999999999999999999999999
Q ss_pred C
Q ss_conf 4
Q gi|254780511|r 247 F 247 (248)
Q Consensus 247 f 247 (248)
T Consensus 241 ~ 241 (248)
T TIGR01400 241 L 241 (248)
T ss_pred H
T ss_conf 9