HHsearch alignment for GI: 254780511 and conserved domain: TIGR01401
>TIGR01401 fliR_like_III type III secretion apparatus protein SpaR/YscT/HrcT; InterPro: IPR006304 These sequences represent members of bacterial type III secretion systems homologous to the flagellar biosynthetic protein FliR (IPR006303 from INTERPRO).; GO: 0006810 transport, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=335.73 Aligned_cols=240 Identities=19% Similarity=0.306 Sum_probs=224.3
Q ss_pred CHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 36999999999999999----999985527888628-8999999999999995214445600012206899999999999
Q gi|254780511|r 5 PEIIMMSLFLIVCRVGS----CIMLLPGLSMSYIPM-QVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFL 79 (248)
Q Consensus 5 ~~~~l~~f~li~~Ri~~----~~~~~P~f~~~~iP~-~vr~~l~l~ls~~~~p~v~~~~~~~~~~~~~~~~~l~l~E~~i 79 (248)
T Consensus 4 ~~~~L~~lal~~~R~~~fylP~f~~LP~l~~~~L~g~~~R~~V~~~l~~~~~~~~~~~~~~l~~~~~~~~~~l~~kE~~i 83 (262)
T TIGR01401 4 LQELLITLALAFARILPFYLPLFLLLPFLASGSLPGGLIRNGVIVVLALPILPIVSTALLALDEEKWFSLAGLLLKEVII 83 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999999989998889899999896541035677414899999999999997546788603410289999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999999999999875422-2026888875301699999999999999945189999999999975556
Q gi|254780511|r 80 GCVHGLLIRVYTLGLQFTGSVISTAIGLNL-QTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPI 158 (248)
Q Consensus 80 Gl~lG~~~~i~f~a~~~AG~~id~q~Gls~-a~~~dP~~~~~~~~~~~l~~~~~~~lF~~~ggh~~li~~l~~Sf~~iP~ 158 (248)
T Consensus 84 GlllG~~l~~PFW~~~a~G~lIDnQRGAt~Ps~~~nPa~G~~tS~~g~lf~~~~~v~Fl~~GG~~~ll~~L~~SY~~wP~ 163 (262)
T TIGR01401 84 GLLLGFLLALPFWIFEAVGFLIDNQRGATLPSSILNPATGVDTSPLGVLFNQFLIVIFLTSGGMELLLEALYESYRLWPL 163 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 99999999989999999999998664230341010666652166899999999999999986999999999999865122
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6556--85799999999999999999999999999999999999999985332548999999999999999999999999
Q gi|254780511|r 159 GQEL--NFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIV 236 (248)
Q Consensus 159 g~~~--~~~~~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~ 236 (248)
T Consensus 164 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~la~P~i~~l~L~e~~lgLl~RfApQLNvF~LslpiKS~~a~~~Llly~~~l~ 243 (262)
T TIGR01401 164 TAFLPAFSAQGLSFLLAQLDQLMALALLLAAPVIIVLLLAELALGLLSRFAPQLNVFILSLPIKSLLALLILLLYFATLL 243 (262)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53057888415899999999999999999999999999999999999855225337778678999999999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780511|r 237 YQFSHSFL 244 (248)
Q Consensus 237 ~~~~~~f~ 244 (248)
T Consensus 244 ~~~~~~~~ 251 (262)
T TIGR01401 244 EEALEELL 251 (262)
T ss_pred HHHHHHHH
T ss_conf 99999987