HHsearch alignment for GI: 254780511 and conserved domain: TIGR01402
>TIGR01402 fliQ flagellar biosynthetic protein FliQ; InterPro: IPR006305 These sequences represent FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participate in bacterial type III protein secretion systems. ; GO: 0016021 integral to membrane, 0019861 flagellum.
Probab=93.70 E-value=0.41 Score=24.46 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999999999999999998533254899999999999999999999999999999999504
Q gi|254780511|r 168 FSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGF 247 (248)
Q Consensus 168 ~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f~~~f 247 (248)
T Consensus 3 ~~~~l~l~~~a~~~~L~l~aP~L~~aL~VGLvIsIf-QA~TqIqE~TLsF~PKii~~ll~l~l~gpWM~~~l~dF~~~~f 81 (88)
T TIGR01402 3 EETVLDLGREALWLTLLLSAPVLLVALVVGLVISIF-QAATQIQEQTLSFIPKIIAVLLALILLGPWMLQKLLDFTREIF 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999989999999999999999-9987885768866989999999999985899998999999999