HHsearch alignment for GI: 254780511 and conserved domain: pfam01311
>pfam01311 Bac_export_1 Bacterial export proteins, family 1. This family includes the following members; FliR, MopE, SsaT, YopT, Hrp, HrcT and SpaR All of these members export proteins, that do not possess signal peptides, through the membrane. Although the proteins that these exporters move may be different, the exporters are thought to function in similar ways.
Probab=100.00 E-value=0 Score=385.32 Aligned_cols=240 Identities=23% Similarity=0.387 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69999999999999999999855278886288999999999999995214445600012206899999999999999999
Q gi|254780511|r 6 EIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKLVMVELFLGCVHGL 85 (248)
Q Consensus 6 ~~~l~~f~li~~Ri~~~~~~~P~f~~~~iP~~vr~~l~l~ls~~~~p~v~~~~~~~~~~~~~~~~~l~l~E~~iGl~lG~ 85 (248)
T Consensus 4 ~~~l~~fllv~~Rv~~~~~~~P~f~~~~iP~~vr~~lal~ls~~l~p~v~~~~~~--~~~~~~~~~~~~~E~~iGl~lG~ 81 (249)
T pfam01311 4 LVLLAALFLAFVRVLALFSTLPFFSDRSLGGVVRNGVALLLALIVAPSIPNQAAP--IISEAQLILLVLKEALLGLLLGF 81 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999864527886729999999999999998568766667--64268999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCC--
Q ss_conf 999999999999999999875422202688887530169999999999999994518999999999997555665568--
Q gi|254780511|r 86 LIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELN-- 163 (248)
Q Consensus 86 ~~~i~f~a~~~AG~~id~q~Gls~a~~~dP~~~~~~~~~~~l~~~~~~~lF~~~ggh~~li~~l~~Sf~~iP~g~~~~-- 163 (248)
T Consensus 82 ~~~l~f~a~~~AG~~i~~q~Gls~a~~~DP~~~~~~~~~~~l~~~~~~~lFl~~~gh~~~i~~l~~Sf~~iP~g~~~~~~ 161 (249)
T pfam01311 82 FLSIPFWAFHAAGELIDNQRGATMASSFDPASGSQSSPVGQFLNQLAILLFLASGGHLLLLSALYDSYQIWPVGQFLPNM 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999999999986676461559877875418999999999999999481999999999998655887666765
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57999999999999999999999999999999999999999853325489999999999999999999999999999999
Q gi|254780511|r 164 FGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSF 243 (248)
Q Consensus 164 ~~~~~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~lgil~R~aPQlnvf~vg~piki~ig~~~l~l~l~~~~~~~~~~f 243 (248)
T Consensus 162 ~~~~~~~~~~~~~~~F~~al~lAaPii~~~ll~~l~lGll~R~~PQlnvf~lg~pvki~~gl~~l~~~lp~~~~~~~~~~ 241 (249)
T pfam01311 162 NAQAAKFLLKALSQLFSIALLLAAPVIILLLLIDLALGLLSRFAPQLNVFVLSFPIKSAVGLLLLALYLPYILPLFKEEL 241 (249)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48999999999999999999999999999999999999999717310069989669999999999999999999999999
Q ss_pred HHHC
Q ss_conf 9504
Q gi|254780511|r 244 LYGF 247 (248)
Q Consensus 244 ~~~f 247 (248)
T Consensus 242 ~~~f 245 (249)
T pfam01311 242 SLLF 245 (249)
T ss_pred HHHH
T ss_conf 9998