Query gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 248
No_of_seqs 114 out of 860
Neff 6.8
Searched_HMMs 23785
Date Tue May 31 21:49:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780511.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zy9_A Mg2+ transporter MGTE; 22.6 26 0.0011 12.5 9.3 28 65-92 371-398 (473)
2 2c4w_A 3-dehydroquinate dehydr 7.0 48 0.002 10.9 -1.1 46 73-118 126-171 (176)
3 1qlo_A Herpes simplex virus pr 5.9 88 0.0037 9.3 -0.3 13 92-104 3-15 (34)
4 3cm1_A SSGA-like sporulation-s 4.3 1.5E+02 0.0063 7.9 2.3 21 143-163 106-126 (139)
5 3bz1_T PSII-T, PSII-TC, photos 3.5 1.9E+02 0.0079 7.3 3.5 23 10-32 4-26 (32)
6 3c0w_A Intron-encoded endonucl 3.4 2E+02 0.0083 7.2 1.2 10 75-84 34-43 (235)
7 2d10_E Ezrin-radixin-moesin bi 3.4 1.8E+02 0.0075 7.5 -0.2 8 204-211 10-17 (28)
8 2ehb_D CBL-interacting serine/ 3.3 2E+02 0.0086 7.1 -0.0 16 99-114 11-26 (143)
9 2imu_A Structural polyprotein 2.9 2.4E+02 0.01 6.7 0.4 11 184-194 12-22 (46)
10 2zfd_B Putative uncharacterize 2.8 2.5E+02 0.01 6.6 0.1 16 99-114 10-25 (123)
No 1
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=22.59 E-value=26 Score=12.48 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2068999999999999999999999999
Q gi|254780511|r 65 NRAYYSKLVMVELFLGCVHGLLIRVYTL 92 (248)
Q Consensus 65 ~~~~~~~l~l~E~~iGl~lG~~~~i~f~ 92 (248)
+..++.-.+.||+.+|+.+|....++..
T Consensus 371 ~~~~~~~~~~kE~~vg~~~G~~~~~i~~ 398 (473)
T 2zy9_A 371 DLRDWRRVFLKEMGVGLLLGLTLSFLLV 398 (473)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8213999999999999999999999999
No 2
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2c4v_A* 1j2y_A* 2wks_A* 2xb9_A*
Probab=7.05 E-value=48 Score=10.85 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999999999999999999999875422202688887
Q gi|254780511|r 73 VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDS 118 (248)
Q Consensus 73 ~l~E~~iGl~lG~~~~i~f~a~~~AG~~id~q~Gls~a~~~dP~~~ 118 (248)
++.+++.|...|+-.+-...|++..-++++....+.-++--||...
T Consensus 126 ~is~~~~g~I~G~G~~gY~lAl~al~~~l~~~~~~~~~~~~~~~~~ 171 (176)
T 2c4w_A 126 YTGAACGGVIMGFGPLGYNMALMAMVNILAEMKAFQEAQKNNPNNP 171 (176)
T ss_dssp HHHHHSSEEEESSTTHHHHHHHHHHHHHHHHHHHHHTTTTCCC---
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 3574033899248857899999999999986476676643899981
No 3
>1qlo_A Herpes simplex virus protein ICP47; membrane proteins; NMR {Herpes simplex virus} SCOP: j.35.1.1
Probab=5.86 E-value=88 Score=9.30 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999998
Q gi|254780511|r 92 LGLQFTGSVISTA 104 (248)
Q Consensus 92 ~a~~~AG~~id~q 104 (248)
|++++|..++|+.
T Consensus 3 walemadtfldnm 15 (34)
T 1qlo_A 3 WALEMADTFLDNM 15 (34)
T ss_dssp TSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHC
T ss_conf 4999899998741
No 4
>3cm1_A SSGA-like sporulation-specific cell division protein; YP_290167.1, streptomyces sporulation and cell division protein, structural genomics; 2.60A {Thermobifida fusca YX}
Probab=4.26 E-value=1.5e+02 Score=7.95 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999999999997555665568
Q gi|254780511|r 143 HQVFYALVKSYGTIPIGQELN 163 (248)
Q Consensus 143 ~~li~~l~~Sf~~iP~g~~~~ 163 (248)
..+.+.+-++|+.+|.|+--.
T Consensus 106 ~~l~~FL~rT~~lVP~G~E~~ 126 (139)
T 3cm1_A 106 APLSEFLHRTYELVPAGQESD 126 (139)
T ss_dssp HHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999998885589976322
No 5
>3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3kzi_T* 3a0b_T* 3a0h_T*
Probab=3.52 E-value=1.9e+02 Score=7.34 Aligned_cols=23 Identities=4% Similarity=0.038 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999998552788
Q gi|254780511|r 10 MSLFLIVCRVGSCIMLLPGLSMS 32 (248)
Q Consensus 10 ~~f~li~~Ri~~~~~~~P~f~~~ 32 (248)
+++.++++-+.|.++++-+|-.+
T Consensus 4 iayv~i~acii~lfffaiffre~ 26 (32)
T 3bz1_T 4 ITYVFIFACIIALFFFAIFFREP 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCC
T ss_pred EHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 13589999999999999984379
No 6
>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A*
Probab=3.39 E-value=2e+02 Score=7.22 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780511|r 75 VELFLGCVHG 84 (248)
Q Consensus 75 ~E~~iGl~lG 84 (248)
+|+++|.++|
T Consensus 34 ~~iliG~LLG 43 (235)
T 3c0w_A 34 FEAGIGLILG 43 (235)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHCC
T ss_conf 9988520044
No 7
>2d10_E Ezrin-radixin-moesin binding phosphoprotein 50; protein-peptide complex, cell adhesion; 2.50A {Mus musculus}
Probab=3.38 E-value=1.8e+02 Score=7.49 Aligned_cols=8 Identities=38% Similarity=0.588 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 98533254
Q gi|254780511|r 204 NKLVPQIP 211 (248)
Q Consensus 204 ~R~aPQln 211 (248)
+|-+|||.
T Consensus 10 ~kkap~md 17 (28)
T 2d10_E 10 SKRAPQMD 17 (28)
T ss_pred HCCCCCCC
T ss_conf 11276435
No 8
>2ehb_D CBL-interacting serine/threonine-protein kinase 24; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4), SOS2 FISL motif; 2.10A {Arabidopsis thaliana}
Probab=3.25 E-value=2e+02 Score=7.14 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 9999987542220268
Q gi|254780511|r 99 SVISTAIGLNLQTSMG 114 (248)
Q Consensus 99 ~~id~q~Gls~a~~~d 114 (248)
++|+...|+.....|+
T Consensus 11 dlIs~S~g~dLSgLFe 26 (143)
T 2ehb_D 11 EMITLSQGLNLSALFD 26 (143)
T ss_dssp HHHTTCTTTCGGGGGC
T ss_pred HHHHHCCCCCCHHHHC
T ss_conf 9998776889367607
No 9
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=2.88 E-value=2.4e+02 Score=6.71 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780511|r 184 RLSSPFLFFYI 194 (248)
Q Consensus 184 ~lA~P~i~~ll 194 (248)
++|+|++-.+|
T Consensus 12 ria~pvlstlf 22 (46)
T 2imu_A 12 RIAVPVVSTLF 22 (46)
T ss_dssp HHSHHHHHHHC
T ss_pred HHHHHHHHHHC
T ss_conf 99899998743
No 10
>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP- binding, kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana}
Probab=2.82 E-value=2.5e+02 Score=6.64 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 9999987542220268
Q gi|254780511|r 99 SVISTAIGLNLQTSMG 114 (248)
Q Consensus 99 ~~id~q~Gls~a~~~d 114 (248)
++|+...|+.....|+
T Consensus 10 diIS~S~GfDLSgLFe 25 (123)
T 2zfd_B 10 DIISGSPGFNLSGLFG 25 (123)
T ss_dssp HHHHTSTTSSSGGGGG
T ss_pred HHHHHCCCCCHHHHCC
T ss_conf 9998676878167518
Done!