Query gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 248
No_of_seqs 114 out of 860
Neff 6.8
Searched_HMMs 13730
Date Wed Jun 1 10:01:44 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780511.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r7ma1 d.95.2.1 (A:3-120) DNA 7.1 45 0.0033 9.6 1.2 12 73-84 30-41 (118)
2 d2yvxa3 f.57.1.1 (A:276-448) M 6.8 48 0.0035 9.5 7.9 27 66-92 74-100 (173)
3 d1oedb_ f.36.1.1 (B:) Acetylch 6.5 50 0.0037 9.3 0.2 30 19-52 18-47 (250)
4 d1ukfa_ d.3.1.10 (A:) Avirulen 3.4 80 0.0058 8.1 -0.7 17 144-160 76-92 (188)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 2.9 1.4E+02 0.01 6.7 3.5 22 10-31 4-25 (30)
6 d1ppjg_ f.23.13.1 (G:) Ubiquin 2.8 1.4E+02 0.01 6.6 2.4 33 168-200 31-63 (75)
7 d3bgea1 a.80.1.2 (A:251-434) U 2.6 1.6E+02 0.011 6.4 1.7 15 140-154 2-16 (184)
8 d1vi2a1 c.2.1.7 (A:107-288) Pu 2.5 1.6E+02 0.012 6.3 1.8 20 138-157 146-165 (182)
9 d1fn9a_ d.196.1.1 (A:) Outer c 2.4 1.7E+02 0.012 6.2 1.7 18 100-118 120-141 (365)
10 d1s7ja_ d.21.1.2 (A:) Hypothet 2.4 1.7E+02 0.012 6.2 1.4 16 114-129 200-215 (260)
No 1
>d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.09 E-value=45 Score=9.62 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780511|r 73 VMVELFLGCVHG 84 (248)
Q Consensus 73 ~l~E~~iGl~lG 84 (248)
..+|+.+|.++|
T Consensus 30 ~q~eilvG~LLG 41 (118)
T d1r7ma1 30 EQFEAGIGLILG 41 (118)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCC
T ss_conf 999999874205
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=6.80 E-value=48 Score=9.47 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 068999999999999999999999999
Q gi|254780511|r 66 RAYYSKLVMVELFLGCVHGLLIRVYTL 92 (248)
Q Consensus 66 ~~~~~~l~l~E~~iGl~lG~~~~i~f~ 92 (248)
..++.-.+.||..+|+.+|........
T Consensus 74 ~~~~~~~l~kE~~vgll~G~~l~~i~~ 100 (173)
T d2yvxa3 74 LRDWRRVFLKEMGVGLLLGLTLSFLLV 100 (173)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 013999999999999999999999899
No 3
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.50 E-value=50 Score=9.32 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999855278886288999999999999995
Q gi|254780511|r 19 VGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLP 52 (248)
Q Consensus 19 i~~~~~~~P~f~~~~iP~~vr~~l~l~ls~~~~p 52 (248)
++-+-+..|.=+ +.++..++...+|+.++-
T Consensus 18 l~~~~f~~p~~~----~er~~l~it~lL~~~~~~ 47 (250)
T d1oedb_ 18 LAILVFYLPPDA----GEKMSLSISALLAVTVFL 47 (250)
T ss_dssp HHHHHHHHHHHC----GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHEECCCC----CCCEEEEHHHHHHHHHHH
T ss_conf 999870506888----775786277999999999
No 4
>d1ukfa_ d.3.1.10 (A:) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Probab=3.45 E-value=80 Score=8.14 Aligned_cols=17 Identities=12% Similarity=0.018 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 99999999997555665
Q gi|254780511|r 144 QVFYALVKSYGTIPIGQ 160 (248)
Q Consensus 144 ~li~~l~~Sf~~iP~g~ 160 (248)
..-+...++..+-|.+.
T Consensus 76 ~~t~~~Lq~~gl~p~~e 92 (188)
T d1ukfa_ 76 TASTAVIEDAGFSLRRE 92 (188)
T ss_dssp HHHHHHHHHTTCEECSC
T ss_pred HHHHHHHHHCCCCCCCC
T ss_conf 89999999779734234
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.89 E-value=1.4e+02 Score=6.72 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999855278
Q gi|254780511|r 10 MSLFLIVCRVGSCIMLLPGLSM 31 (248)
Q Consensus 10 ~~f~li~~Ri~~~~~~~P~f~~ 31 (248)
+++.++++-+.+.++++-+|-.
T Consensus 4 i~yv~ifac~i~lfffaiffre 25 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC
T ss_pred EEHHHHHHHHHHHHHHHHHHCC
T ss_conf 3017999999999999998448
No 6
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.80 E-value=1.4e+02 Score=6.63 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999
Q gi|254780511|r 168 FSSFVNMLQTTFMIMLRLSSPFLFFYIVFNISI 200 (248)
Q Consensus 168 ~~~~~~~~~~~f~~al~lA~P~i~~lll~~i~l 200 (248)
.+.+-+.+-+.-...+.++-|+++..++.|-+-
T Consensus 31 ~~gi~N~~RR~~~~~l~v~PPfi~~Y~iy~W~~ 63 (75)
T d1ppjg_ 31 SKGIPNVLRRTRACILRVAPPFVAFYLVYTWGT 63 (75)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCEEECCHHHHHHHHHHHHH
T ss_conf 762518999868741377077999999999888
No 7
>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]}
Probab=2.60 E-value=1.6e+02 Score=6.39 Aligned_cols=15 Identities=33% Similarity=0.195 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 518999999999997
Q gi|254780511|r 140 DFHHQVFYALVKSYG 154 (248)
Q Consensus 140 ggh~~li~~l~~Sf~ 154 (248)
|.|.-+++++.+|-+
T Consensus 2 d~hYd~iSA~~KSiR 16 (184)
T d3bgea1 2 DRFYDLISALHKSVR 16 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 439999999999874
No 8
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}
Probab=2.53 E-value=1.6e+02 Score=6.30 Aligned_cols=20 Identities=10% Similarity=0.080 Sum_probs=17.1
Q ss_pred HHCCHHHHHHHHHHHHHHCC
Q ss_conf 94518999999999997555
Q gi|254780511|r 138 VIDFHHQVFYALVKSYGTIP 157 (248)
Q Consensus 138 ~~ggh~~li~~l~~Sf~~iP 157 (248)
+.+|+.+++.=-++||++|-
T Consensus 146 ~i~Gl~Mli~Qa~~~f~iwt 165 (182)
T d1vi2a1 146 TIDGYGMLLWQGAEQFTLWT 165 (182)
T ss_dssp EECHHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHH
T ss_conf 85549999999999999994
No 9
>d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus [TaxId: 10891]}
Probab=2.45 E-value=1.7e+02 Score=6.20 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=7.1
Q ss_pred HHHHHHH----HHHHHCCCCCCC
Q ss_conf 9999875----422202688887
Q gi|254780511|r 100 VISTAIG----LNLQTSMGISDS 118 (248)
Q Consensus 100 ~id~q~G----ls~a~~~dP~~~ 118 (248)
-+..+.| ... ...||.+-
T Consensus 120 rv~~egg~lvE~~~-~~lD~~s~ 141 (365)
T d1fn9a_ 120 RVRTEGGSLVELNW-LQVDPNSM 141 (365)
T ss_dssp HHHHHCCEEEECCG-GGSSTTST
T ss_pred HHHHCCCCCCCCCE-EECCHHHH
T ss_conf 76636886331333-42160665
No 10
>d1s7ja_ d.21.1.2 (A:) Hypothetical protein EF0119 {Enterococcus faecalis [TaxId: 1351]}
Probab=2.43 E-value=1.7e+02 Score=6.18 Aligned_cols=16 Identities=19% Similarity=0.013 Sum_probs=0.0
Q ss_pred CCCCCCCCCHHHHHHH
Q ss_conf 8888753016999999
Q gi|254780511|r 114 GISDSLAETPLNSLIG 129 (248)
Q Consensus 114 dP~~~~~~~~~~~l~~ 129 (248)
||.+|+..+.++.++.
T Consensus 200 DpaTGSA~~~La~yl~ 215 (260)
T d1s7ja_ 200 DPVCGSAHANLIPYWG 215 (260)
T ss_dssp ESCCSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 0033366777999997
Done!