BLAST/PSIBLAST alignment of GI: 254780511 and GI: 116250508 at iteration 1
>gi|116250508|ref|YP_766346.1| flagellar biosynthesis protein FliR [Rhizobium leguminosarum bv. viciae 3841] Length = 250
>gi|115255156|emb|CAK06230.1| putative flagellar biosynthetic protein FliR [Rhizobium leguminosarum bv. viciae 3841] Length = 250
 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/244 (43%), Positives = 153/244 (62%), Gaps = 2/244 (0%)

Query: 1   MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
           M   P+  +++LFL+ CR+G C++ LPG S + +P Q+R+  A A SI ++P LWDT+  
Sbjct: 1   MITDPQGTVLALFLVFCRIGGCVLALPGFSSARVPQQLRVFIAGALSIAVMPLLWDTVYP 60

Query: 61  QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
                   Y  L+  E  +G ++G+L R+YTLG+QF  S+ +  +G     S  I +   
Sbjct: 61  AVHTGAGTYIGLIFSESLIGVMYGMLARIYTLGMQFAASITAMMVGYTQPGSADILEDTP 120

Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
           ET L++ I   G++ L+++DFHH VF AL+ SY T+P G  +       SF + L+ T  
Sbjct: 121 ETSLSAFITFAGMMILFIMDFHHIVFRALIDSYTTMPFGGLMQMRATLISFTDTLEQTTY 180

Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLC-LSIEIIVYQF 239
           IMLRLSSPFL + ++FN+SIG +NKL PQIP+YFISTPYL+ +G LFL   SI  +V QF
Sbjct: 181 IMLRLSSPFLIYGLIFNVSIGFINKLAPQIPVYFISTPYLL-MGGLFLIYFSIAAMVSQF 239

Query: 240 SHSF 243
             SF
Sbjct: 240 GQSF 243