RPSBLAST alignment for GI: 254780511 and conserved domain: TIGR01400

>gnl|CDD|130467 TIGR01400, fliR, flagellar biosynthetic protein FliR. This model recognizes the FliR protein of bacterial flagellar biosynthesis. It distinguishes FliR from the homologous proteins bacterial type III protein secretion systems, known by names such as YopT, EscT, and HrcT. Length = 245

 Score =  104 bits (261), Expect = 2e-23
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 1/236 (0%)

Query: 13  FLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDLQNFVNRAYYSKL 72
           FL   RVG+ +M +P  S   +P++VRL  A+A + ++LPFL  +    N +   ++  L
Sbjct: 5   FLPFVRVGAFLMTMPFFSERLVPVRVRLYLALALTFIVLPFLPPSPPPVN-LFSLFFVLL 63

Query: 73  VMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLAETPLNSLIGIIG 132
           ++ E+ +G + G ++++        G +IS  +GL   + +  S       L  ++ ++ 
Sbjct: 64  LLQEILIGLLIGFILQLLFAAFVLAGEIISMQMGLGFASMVDPSSGEQTPILGQILYLLA 123

Query: 133 LLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFF 192
           LL    +D HH +   LV S+ ++P+G     GN F   +  L   F++ L L+ P +  
Sbjct: 124 LLLFLALDGHHLLILGLVDSFKSLPVGSFFLNGNFFELILKALSDMFLLGLLLALPIIAA 183

Query: 193 YIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFSHSFLYGFF 248
            ++ N+ +GL+N+  PQI I+ I  P  I LG + L L +  +   F   F     
Sbjct: 184 LLLVNLVLGLVNRAAPQINIFSIGFPLKIALGLILLYLILPGMAILFKDLFEELLE 239