RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein
FliR [Candidatus Liberibacter asiaticus str. psy62]
         (248 letters)



>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase;
           TM0574, structural genomics, JCSG, protein structure
           initiative, PSI; 2.00A {Thermotoga maritima} (A:77-173)
          Length = 97

 Score = 28.2 bits (63), Expect = 1.2
 Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 2/62 (3%)

Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188
             I +L +  ++     +  LV+    +  G EL      S+           +L+    
Sbjct: 12  ASIEILLIERLEEGI--WKCLVRPGQKVKKGTELVIDEDLSAVCLGRGEDGTRILKFQPQ 69

Query: 189 FL 190
             
Sbjct: 70  DD 71


>2nrh_A Transcriptional activator, putative, BAF family; structural
           genomics, unknown function, putative transcription
           activator, PSI-2; 2.30A {Campylobacter jejuni}
           (A:1-84,A:193-219)
          Length = 111

 Score = 25.2 bits (55), Expect = 9.5
 Identities = 5/40 (12%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 180 MIMLRLSSPFLFFY---IVFNISIGLLNKLVPQIPIYFIS 216
           +++  + +    F      F ++I    +   +  I++I+
Sbjct: 3   LLLCDIGNSNANFLDDNKYFTLNIDQFLEFKNEQKIFYIN 42


>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
          tuberculosis H37RV} (A:24-35,A:323-406)
          Length = 96

 Score = 25.2 bits (55), Expect = 9.6
 Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 3  ISPEIIMMSLFL--IVCRVGSCIMLLPGLSMSYIPMQVRLCFA 43
          +  + ++  L    I+    +   +L  L ++ +   V +  A
Sbjct: 35 VPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLA 77


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.334    0.148    0.450 

Gapped
Lambda     K      H
   0.267   0.0375    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,797,998
Number of extensions: 74535
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 14
Length of query: 248
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 162
Effective length of database: 2,048,819
Effective search space: 331908678
Effective search space used: 331908678
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (25.2 bits)