RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter asiaticus str. psy62] (248 letters) >1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} (A:77-173) Length = 97 Score = 28.2 bits (63), Expect = 1.2 Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 2/62 (3%) Query: 129 GIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSP 188 I +L + ++ + LV+ + G EL S+ +L+ Sbjct: 12 ASIEILLIERLEEGI--WKCLVRPGQKVKKGTELVIDEDLSAVCLGRGEDGTRILKFQPQ 69 Query: 189 FL 190 Sbjct: 70 DD 71 >2nrh_A Transcriptional activator, putative, BAF family; structural genomics, unknown function, putative transcription activator, PSI-2; 2.30A {Campylobacter jejuni} (A:1-84,A:193-219) Length = 111 Score = 25.2 bits (55), Expect = 9.5 Identities = 5/40 (12%), Positives = 17/40 (42%), Gaps = 3/40 (7%) Query: 180 MIMLRLSSPFLFFY---IVFNISIGLLNKLVPQIPIYFIS 216 +++ + + F F ++I + + I++I+ Sbjct: 3 LLLCDIGNSNANFLDDNKYFTLNIDQFLEFKNEQKIFYIN 42 >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis H37RV} (A:24-35,A:323-406) Length = 96 Score = 25.2 bits (55), Expect = 9.6 Identities = 6/43 (13%), Positives = 17/43 (39%), Gaps = 2/43 (4%) Query: 3 ISPEIIMMSLFL--IVCRVGSCIMLLPGLSMSYIPMQVRLCFA 43 + + ++ L I+ + +L L ++ + V + A Sbjct: 35 VPADRVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLA 77 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.334 0.148 0.450 Gapped Lambda K H 0.267 0.0375 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,797,998 Number of extensions: 74535 Number of successful extensions: 222 Number of sequences better than 10.0: 1 Number of HSP's gapped: 221 Number of HSP's successfully gapped: 14 Length of query: 248 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 162 Effective length of database: 2,048,819 Effective search space: 331908678 Effective search space used: 331908678 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 53 (25.2 bits)