RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein
FliR [Candidatus Liberibacter asiaticus str. psy62]
         (248 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 52/280 (18%), Positives = 85/280 (30%), Gaps = 124/280 (44%)

Query: 3   IS-PEIIMMSL--FLIVCRVGSCIMLLPGLSMSYIPMQVRLCF----------------A 43
           IS P I ++ L  +++  ++     L  G +    P ++R                   A
Sbjct: 236 ISCPLIGVIQLAHYVVTAKL-----L--GFT----PGELRSYLKGATGHSQGLVTAVAIA 284

Query: 44  MAFSIVLLPFLWDTIDLQNFVNRAYY--SKLVMVELF-LGCVHGLLIRVYTLGLQFTGSV 100
              S       W++          ++   +  +  LF +G       R Y     +  + 
Sbjct: 285 ETDS-------WES----------FFVSVRKAITVLFFIGV------RCY---EAYPNTS 318

Query: 101 ISTAIGLNLQTSMGISDSLAE---TPLNSLIGIIGLLALWVIDF-----HH-----QVFY 147
           +  +I         + DSL      P + ++ I  L    V D+      H     QV  
Sbjct: 319 LPPSI---------LEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368

Query: 148 ALVKS-------------YG------TIPIGQELNFGNI-FS----SFVNMLQTTFMIML 183
           +LV               YG             L+   I FS     F N     F   L
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN----RF---L 421

Query: 184 RLSSPFLFFYIVFNISIGLLNKLVP----------QIPIY 213
            ++SPF    +V   S  +   LV           QIP+Y
Sbjct: 422 PVASPFHSHLLV-PASDLINKDLVKNNVSFNAKDIQIPVY 460



 Score = 33.8 bits (77), Expect = 0.039
 Identities = 51/285 (17%), Positives = 87/285 (30%), Gaps = 133/285 (46%)

Query: 54  LWDTIDLQNFVNRAYYSKLVMVELFLGCVHGLLIR----------VYTLGLQF------- 96
           L+ T           Y   V+V   +      L            V+T GL         
Sbjct: 176 LYQT-----------YH--VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222

Query: 97  -----TGSVISTA-----IGLNLQ------T--SMGISDSLAETP--LNSLI-------- 128
                   ++S       IG+ +Q      T   +G       TP  L S +        
Sbjct: 223 SNTPDKDYLLSIPISCPLIGV-IQLAHYVVTAKLLGF------TPGELRSYLKGATGHSQ 275

Query: 129 GIIGLLAL-----WVIDFHHQVFYALVKSYGTIP--IG---QELNFGNIFSSFVNMLQT- 177
           G++  +A+     W      + F+  V+   T+   IG    E  + N      ++L+  
Sbjct: 276 GLVTAVAIAETDSW------ESFFVSVRKAITVLFFIGVRCYE-AYPNTSLPP-SILEDS 327

Query: 178 --------TFMIMLR-LSSPFLFFYI-VFN--------ISIGLLN---KLVPQIPIYFIS 216
                   + M+ +  L+   +  Y+   N        + I L+N    LV       +S
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-------VS 380

Query: 217 TPYLIGLGSLF-LCLSIEII-----VYQ-----------FSHSFL 244
            P      SL+ L L++        + Q           FS+ FL
Sbjct: 381 GPPQ----SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.334    0.148    0.450 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,048,477
Number of extensions: 88748
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 15
Length of query: 248
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 158
Effective length of database: 3,511,270
Effective search space: 554780660
Effective search space used: 554780660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.7 bits)