RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein
FliR [Candidatus Liberibacter asiaticus str. psy62]
         (248 letters)



>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 109

 Score = 25.9 bits (57), Expect = 3.5
 Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 98  GSVISTAIGLNLQTSMG-ISDSLAETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTI 156
           G+++  A+ + + T+   +     ++ +  LI  IG+ A   +                I
Sbjct: 3   GNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQSDVGILR----------IGI 52

Query: 157 PIGQELNFGNIFSSFVNMLQTTFMIMLRL 185
             GQ ++   + S+ +N     F +   +
Sbjct: 53  GGGQTIDLNVLLSAAINFFLIAFAVYFLV 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.148    0.450 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 894,456
Number of extensions: 39001
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 10
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 52 (24.3 bits)