BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein
FliR [Candidatus Liberibacter asiaticus str. psy62]
         (248 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780511|ref|YP_003064924.1| flagellar biosynthesis protein FliR [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 248

 Score =  489 bits (1258), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 248/248 (100%), Positives = 248/248 (100%)

Query: 1   MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60
           MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL
Sbjct: 1   MTISPEIIMMSLFLIVCRVGSCIMLLPGLSMSYIPMQVRLCFAMAFSIVLLPFLWDTIDL 60

Query: 61  QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120
           QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA
Sbjct: 61  QNFVNRAYYSKLVMVELFLGCVHGLLIRVYTLGLQFTGSVISTAIGLNLQTSMGISDSLA 120

Query: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180
           ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM
Sbjct: 121 ETPLNSLIGIIGLLALWVIDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFM 180

Query: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240
           IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS
Sbjct: 181 IMLRLSSPFLFFYIVFNISIGLLNKLVPQIPIYFISTPYLIGLGSLFLCLSIEIIVYQFS 240

Query: 241 HSFLYGFF 248
           HSFLYGFF
Sbjct: 241 HSFLYGFF 248


>gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 23.1 bits (48), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 204 NKLVPQIPIYFISTPYL 220
            +L+ QIP Y I+ PY+
Sbjct: 302 KELMRQIPTYVITNPYI 318


>gi|254780494|ref|YP_003064907.1| cation diffusion facilitator family transporter, putative
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 314

 Score = 22.3 bits (46), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 139 IDFHHQVFYALVKSYGTIPIGQELNFGNIFSSFVNMLQTTFMIMLRLSSPFLFFYIVFNI 198
           I+F   V Y+ V S+  + +G       ++ +  N    +  I L   S  +  Y++  +
Sbjct: 122 INFEKAVIYSCVASFICLMMG-------VYENRCNREIKSDFIALDAKSWIVAGYLLLAV 174

Query: 199 SIGLLNKLVPQIPIYFISTPYLIGLGSLFLCL 230
            I  L  ++ +   Y    PY+  +  +F+CL
Sbjct: 175 VIAFLCAMLLRDSAYDWIIPYVDSMVLMFICL 206


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.334    0.148    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,000
Number of Sequences: 1233
Number of extensions: 6283
Number of successful extensions: 35
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 10
length of query: 248
length of database: 328,796
effective HSP length: 72
effective length of query: 176
effective length of database: 240,020
effective search space: 42243520
effective search space used: 42243520
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 37 (18.9 bits)