HHsearch alignment for GI: 254780512 and conserved domain: PRK06012

>PRK06012 flhA flagellar biosynthesis protein FlhA; Validated.
Probab=100.00  E-value=0  Score=1953.57  Aligned_cols=683  Identities=42%  Similarity=0.700  Sum_probs=661.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00000001001345899999999999960384789999999999999999999951377045420048999999999855
Q gi|254780512|r    7 GISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSL   86 (692)
Q Consensus         7 ~~~~~~~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~L   86 (692)
T Consensus         5 ~~~~~~~~~~~~d~~~~~~~~~ii~~~iiPlP~~llD~ll~~ni~~s~lil~~~~~~~~pl~fs~FPslLL~~TlfRL~L   84 (691)
T PRK06012          5 RLPNNLKLLNARDLAVALLVLAILAMMILPLPPFLLDILLTFNIALSVLILLVALFIQRPLDFSAFPTLLLITTLLRLAL   84 (691)
T ss_pred             CCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf             55255542354315899999999999741797899999999999999999999986588412100549999999999998


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             48888898843777763267899987514501326999999999999999886457514666554544203760345478
Q gi|254780512|r   87 NIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAID  166 (692)
Q Consensus        87 niasTRlIL~~g~~g~~~AG~vI~aFG~fVvggn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaID  166 (692)
T Consensus        85 nissTRlIL~~g~~g~~~AG~vI~~FG~FVvggn~vVG~viF~Il~ivqFiVITkGa~RvAEVaARFtLDamPGKQMaID  164 (691)
T PRK06012         85 NVASTRLILLEGHEGTDAAGKVIEAFGQFVVGGNYVVGIVVFLILVIINFVVITKGAGRIAEVAARFTLDAMPGKQMAID  164 (691)
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf             79999999976887764203899985210676845435589899987753488158417878777620046886322156


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             78764899989999999999865222201220134530105899999999988899999997399889999998999864
Q gi|254780512|r  167 ADLSSGLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVG  246 (692)
Q Consensus       167 aDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIG  246 (692)
T Consensus       165 aDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGAsKFVkGDAIAgiiI~~iNiigG~~iGv~q~gm~~~~A~~~Yt~LTIG  244 (691)
T PRK06012        165 ADLNAGLIDEEEAKKRREEVQQEADFYGAMDGASKFVKGDAIAGILITFINIIGGLIIGVVQHGMSFGEAAETYTLLTIG  244 (691)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHEEEEC
T ss_conf             38666999999999999999864213102553465524642899999999985114888862699899999874502242


Q ss_pred             HHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57888515899987331026623774305899999876186489999999999861578647899999999999999886
Q gi|254780512|r  247 DGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVP  326 (692)
Q Consensus       247 DGLVsQIPaLliS~aaGiiVTRvss~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~  326 (692)
T Consensus       245 DGLVsQIPaLliS~AaGiiVTR~~~~~~lg~~i~~Ql~~~p~al~i~a~il~~lglvPG~P~~~Fl~la~~l~~~~~~l~  324 (691)
T PRK06012        245 DGLVAQIPALLISTAAGIIVTRVSSDGDFGEAIVGQLFANPKALYIAAGVLFLLGLVPGMPHLPFLLLAGLLGFLAYRLR  324 (691)
T ss_pred             HHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             14887717999997754588757785558999999997296789999999999987589816799999999999999987


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             4432222100110002356676753001002460122101-111123457552688999999999998098788324454
Q gi|254780512|r  327 YKNELQRLAKVAQIQEASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTT  405 (692)
Q Consensus       327 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrD  405 (692)
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~i~lelg~~Li~lvd~~~~g~L~~RI~~lRk~ia~elG~vlP~IrIrD  404 (691)
T PRK06012        325 KREKKEAEEAAAEAEEAAEPEEESWDDVLPVDPLGLEVGYRLIPLVDENQGGELLDRIKGIRKKIAQELGFLVPPVRIRD  404 (691)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             41012323344444445567865633425677368887064797541103672999999999999998298878169986


Q ss_pred             CCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHH
Q ss_conf             37789871699974824534884178341330588876788741014766883034397884588828990705889999
Q gi|254780512|r  406 DISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVL  485 (692)
Q Consensus       406 n~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~Via  485 (692)
T Consensus       405 n~~L~p~~Y~I~I~gv~va~g~i~pd~~LAi~~~~~~~~l~G~~t~ePafGl~A~WI~~~~~~~A~~~Gytvvdp~sVia  484 (691)
T PRK06012        405 NLQLPPNEYRIKIKGVEVGEGELRPGRLLAMNPGGVDGELPGIPTKEPAFGLPAVWIDEALREQAQLLGYTVVDPATVVA  484 (691)
T ss_pred             CCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEECHHHHHH
T ss_conf             78899876999989888988887788577578877656789842458899985397587568899987998976588999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             99999999879998729999999999766648999986311599899999999999749865469999999987533579
Q gi|254780512|r  486 THLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSR  565 (692)
Q Consensus       486 tHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~k  565 (692)
T Consensus       485 THL~evlr~~a~ellg~QEvq~LLd~L~~~~p~LVeElvp~~lsl~~i~~VLq~LL~E~VsIRdl~~IlEaLad~a~~~k  564 (691)
T PRK06012        485 THLTEVIKQHAAELLGRQEVQQLLDRLAKEYPKLVEELVPKVLSLGTLQKVLQNLLKERVSIRDLRTILETLAEYAPITK  564 (691)
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             99999999989998489999999999986748999986126758899999999998699610468999999998733579


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             98999999999989998652077-88489998887899999998303777884645669889999999999999999956
Q gi|254780512|r  566 KTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDK  644 (692)
Q Consensus       566 D~~~LtE~VR~aL~R~I~~~~~~-~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~  644 (692)
T Consensus       565 D~~~LtE~VR~aL~r~I~~~~~~~~g~L~vi~L~p~lE~~l~~si~-~~~g~~--l~L~P~~~~~li~~l~~~~~~~~~~  641 (691)
T PRK06012        565 DPDELTEHVRQRLGRQIVQQYKGEDGELPVITLDPELEQLLLQSLQ-GGGGSY--LALEPGLAERLLQSLQEAVERQEMK  641 (691)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHH-HCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999852899746999978899999999986-078876--6779899999999999999999854


Q ss_pred             CCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf             998799828335489999988644898189440178996579888609
Q gi|254780512|r  645 GIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS  692 (692)
Q Consensus       645 g~~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is  692 (692)
T Consensus       642 g~~pVLl~s~~iRr~lr~lie~~~p~l~VLS~~EI~~~~~i~~~g~I~  689 (691)
T PRK06012        642 GEPPVLLVSPALRPYLRRLLERFLPQLPVLSYNEIPDNKRIRIVGTVG  689 (691)
T ss_pred             CCCEEEEECHHHHHHHHHHHHHHCCCCEEEEHHHCCCCCCEEEEEEEC
T ss_conf             999699908778999999999868998696034349998158999961