>TIGR01398 FlhA flagellar biosynthesis protein FlhA; InterPro: IPR006301 These sequences describe the flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. ; GO: 0015031 protein transport, 0016021 integral to membrane, 0019861 flagellum.

Probab=100.00 E-value=0 Score=2112.96 Aligned_cols=674 Identities=46% Similarity=0.765 Sum_probs=653.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 34589999999999996038478999999999999999999995137704542004899999999985548888898843 Q gi|254780512|r 18 HDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSF 97 (692) Q Consensus 18 ~d~~~~~~~~~ii~~~iiPlP~~llD~~~~~ni~~s~lil~~~l~~~~pl~fs~FPslLL~~TlfRL~LniasTRlIL~~ 97 (692) T Consensus 2 ~~~~~~~~v~~I~~~~i~PlP~~lLD~lla~nIalS~lILl~~l~i~kPLdFS~FPt~LL~~TlfRL~LNvAsTR~IL~~ 81 (713) T TIGR01398 2 KDLLLAIGVVVILAVIIIPLPAFLLDILLALNIALSLLILLVTLFIQKPLDFSSFPTLLLIATLFRLSLNVASTRLILTH 81 (713) T ss_pred CEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 30024699999888875078767999999999999999999997522421123005799999998888889999897607 Q ss_pred CCCCCCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 777763267899987514501----3269999999999999998864575146665545442037603454787876489 Q gi|254780512|r 98 GHEGYGAAGGIIAGFSSLVMS----GDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGL 173 (692) Q Consensus 98 g~~g~~~AG~vI~aFG~fVvg----gn~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~ 173 (692) T Consensus 82 G~~G~~AaG~VI~aFG~FVvG~~G~G~~ViG~iVF~ILiiiNF~VITKGA~RiaEVaARFTLDamPGKQMaIDADLNAGl 161 (713) T TIGR01398 82 GHEGPNAAGKVIEAFGQFVVGSSGTGNYVIGLIVFIILIIINFIVITKGATRIAEVAARFTLDAMPGKQMAIDADLNAGL 161 (713) T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCC T ss_conf 99775401356443330100211588707875323644335251131675114678888875126885314455321789 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99899999999998652222012201345301058999999999888999999973998899999989998645788851 Q gi|254780512|r 174 IEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQV 253 (692) Q Consensus 174 I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVkGDAiAgiiI~~iNiigG~~iG~~q~gm~~~eA~~~Yt~LTIGDGLVsQI 253 (692) T Consensus 162 Ite~EAk~RR~e~~~Ea~FyGAMDGASKFVkGDAIAGiiIt~iNIigGliiGv~~h~M~~~~Aa~~YT~LTiGDGLVaQI 241 (713) T TIGR01398 162 ITEEEAKKRREELEQEADFYGAMDGASKFVKGDAIAGIIITLINIIGGLIIGVVQHGMSLSEAASTYTILTIGDGLVAQI 241 (713) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 89899999999998633011020267652001389999999999988787656631763899998867776877899987 Q ss_pred HHHHHHHHHHHEEEECCC-CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--- Q ss_conf 589998733102662377-4305899999876186489999999999861578647899999999999999886443--- Q gi|254780512|r 254 PALIISLSAAFLVSRTTS-KGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKN--- 329 (692) Q Consensus 254 PaLliS~aaGiiVTRvss-~~~lg~~i~~Ql~~~p~aL~iaa~~l~~lglvPGmP~~~Fl~la~~l~~~a~~~~r~~--- 329 (692) T Consensus 242 PaL~iS~AtG~~VTR~~~~~~~~~~~~~~QL~~~p~~l~~~A~~L~lla~~PGlP~~~~~~~a~~l~~~a~~~~~~~~~~ 321 (713) T TIGR01398 242 PALIISTATGIIVTRASSDEGNLGKAIVTQLTANPRVLLIVAAVLGLLALVPGLPTLPFLLLAGALAFLAWYLRRRAKEG 321 (713) T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999998766322256640124789999986221899999999999987305337999999999999999998866642 Q ss_pred --------------------HHHHHHHH---HHCCCCCCCCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHH Q ss_conf --------------------22221001---10002356676753001002460122101-1111234575526889999 Q gi|254780512|r 330 --------------------ELQRLAKV---AQIQEASKQNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSK 385 (692) Q Consensus 330 --------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~ 385 (692) T Consensus 322 ~~~~~~~~~S~~~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~Le~GYgLIpLvd~~qg~~L~~RI~~ 401 (713) T TIGR01398 322 KLDKLEVKKSKKFALVLSEKKQKEEAAAEAAKAQEEAEEEEEESINDILALDDLELELGYGLIPLVDESQGGDLLDRIRS 401 (713) T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEECCCHHHCCCCCCCCHHHHHHH T ss_conf 34444433110456763334554410101332024334566562221266421588870652110125568732799999 Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHH Q ss_conf 99999998098788324454377898716999748245348841783413305888767887410147668830343978 Q gi|254780512|r 386 IRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMES 465 (692) Q Consensus 386 iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~ 465 (692) T Consensus 402 iRk~~A~e~Gfv~P~iRi~Dn~~L~P~~Y~IkikG~eva~gel~pg~~LA~~~g~~~~~i~Ge~t~ePAFGl~A~WI~e~ 481 (713) T TIGR01398 402 IRKQLAQELGFVVPVIRIRDNLRLPPNEYRIKIKGVEVARGELRPGKYLAMNPGDADGEIPGEETREPAFGLPAYWIEEK 481 (713) T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEEEEEEEEEEEEECCEEEEECCCCCCCCCCCEECCCCCCCCCCEECCHH T ss_conf 98999986595188213530444789961799988998733664270786468899863175001078889861213813 Q ss_pred HHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC Q ss_conf 84588828990705889999999999998799987299999999997666489999863115998999999999997498 Q gi|254780512|r 466 FSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHV 545 (692) Q Consensus 466 ~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~V 545 (692) T Consensus 482 ~~e~A~~~GYTVVDp~tVlaTHL~E~ik~na~~LL~r~ev~~LLd~l~~~~PklVee~~P~~~~~~~iq~VLq~LL~E~V 561 (713) T TIGR01398 482 NKEEAERLGYTVVDPATVLATHLSEVIKNNAAELLTRQEVQNLLDRLKEEYPKLVEELIPDKVPLGTIQKVLQLLLRERV 561 (713) T ss_pred HHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEHHHCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 48999864985870179999999999999898851589999999860132674001138895563369999997531789 Q ss_pred CHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 65469999999987533579-9899999999998999865207-788489998887899999998303777884645669 Q gi|254780512|r 546 SIRNLPLILESIAEVAPHSR-KTSHIVEQVRIRMAQQICGDLA-PTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVE 623 (692) Q Consensus 546 sIRdlr~IlEaLad~a~~~k-D~~~LtE~VR~aL~R~I~~~~~-~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~ 623 (692) T Consensus 562 SIRnl~~ILEtlad~a~~~~~~~~~L~E~VR~rL~rqI~~~~~~~~g~L~~~~L~~~~E~~l~~~l~~~~~~~~~~~~L~ 641 (713) T TIGR01398 562 SIRNLLTILETLADYAPITKTDPDLLVEHVRQRLGRQITQQYLDEDGVLKVITLDPDLEAALAEALKEDGEGELLELALE 641 (713) T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 81306789999988775306878789999999999999996448898279998583889999987405877642125778 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC----CEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEEE Q ss_conf 88999999999999999995699----879982833548999998864489818944017899657988860 Q gi|254780512|r 624 PRAVEMFSENATNSIRQYIDKGI----PLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTI 691 (692) Q Consensus 624 P~~~~~l~~~i~~~~~~~~~~g~----~pVLl~s~~iRr~lr~lle~~~p~l~VLS~~EI~~~~~i~~iG~I 691 (692) T Consensus 642 P~~~~~l~~~~~~~~~~~~~~g~~~~~~~vL~t~~~~R~~~~~~le~~~~~~~VLS~~Ei~~~~~~~~~G~v 713 (713) T TIGR01398 642 PALLEELLRKVRKEVEKLAQNGEAEFVPPVLLTSPRVRPYVRRILERYFPELPVLSYNEIPKNVRVETVGVV 713 (713) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEC T ss_conf 778899999999999999863677131279972860248999999873587400151125789606887629

HHsearch alignment for GI: 254780512 and conserved domain: TIGR01398