HHsearch results for GI: 254780512 and protein with PDBid: 3a5i_A

>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=100.00  E-value=0  Score=751.23  Aligned_cols=338  Identities=25%  Similarity=0.435  Sum_probs=328.0

Q ss_pred             CCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEE
Q ss_conf             6753001002460122101-111123457552688999999999998098788324454377898716999748245348
Q gi|254780512|r  348 QHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAIS  426 (692)
Q Consensus       348 ~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~g  426 (692)
                      +.+|+.....|++++++|| +++++|.+++++|++||+++||++|+||||++|+||||||++|+||+|+|+|+|+++++|
T Consensus        48 e~sw~dv~~vd~i~levGy~Li~lvd~~~gg~Ll~RI~~iRk~~a~elG~vvP~I~IrDnl~L~p~~Y~I~i~Gv~va~g  127 (389)
T 3a5i_A           48 EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQDMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG  127 (389)
T ss_dssp             CCCGGGCCCCCSEEEEECGGGTTTTCSSSCCHHHHHHHHHHHHHHHHTSSCCCCEEEEECTTSCTTEEEEEETTEEEEEE
T ss_pred             CCCHHHCCCCCEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCEEEEEE
T ss_conf             56621166555079997414286638778970899999999999997198789568971798999868999998999998


Q ss_pred             EECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             84178341330588876788741014766883034397884588828990705889999999999998799987299999
Q gi|254780512|r  427 ELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVK  506 (692)
Q Consensus       427 ei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq  506 (692)
                      +++||++||+++++....++|++++||+||+||+||+++++++|+..|||||||.+||+||+++++|+||+||||+||||
T Consensus       128 ~l~p~~~Lai~~~~~~~~l~G~~t~ePafGl~A~WI~~~~~~~A~~~Gytvvd~~tViaTHL~evlr~~a~eLlgrqevq  207 (389)
T 3a5i_A          128 DAYPGRWLAINPGTAAGTLPGEKTVDPAFGLDAIWIESALKEQAQIQGFTVVEASTVVATHLNHLIGQFSAELFGRQEAQ  207 (389)
T ss_dssp             ECCTTEEEEECCSSCCCCCSSEEEECSSSCCEEEEEESTTHHHHHHTTCEEEEHHHHHHHHHHHHHHHTTTTTCCHHHHH
T ss_pred             EECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf             86377079888998757778732455689987288688777688767987971687999999999998699882899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999766648999986311599899999999999749865469999999987533579989999999999899986520
Q gi|254780512|r  507 NLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDL  586 (692)
Q Consensus       507 ~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~  586 (692)
                      +|||+++++||+||||++|+++|++.+|+|||+||+|+||||||++|||||+||++++|||+.||||||++|+||||++|
T Consensus       208 ~LLd~l~~~~p~LVeelvp~~lsl~~i~~VLq~LL~E~VsIRdl~tIlEtLae~a~~~kd~~~LtE~VR~aL~r~I~~~~  287 (389)
T 3a5i_A          208 QLLDRVSQEMPKLTEDLVPGVVTLTTLHKVLQNLLAEKVPIRDMRTILETLAEHAPLQSDPHELTAVVRVALGRAITQQW  287 (389)
T ss_dssp             HHHHHHHTTCHHHHHTTTTTTSCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHGGGCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999876657999975305779999999999999789628789999999998731579999999999999999999986


Q ss_pred             CC-CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf             77-88489998887899999998303777884645669889999999999999999956998799828335489999988
Q gi|254780512|r  587 AP-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILE  665 (692)
Q Consensus       587 ~~-~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~lle  665 (692)
                      .+ +|.|+|++|+|+||+++++++++++       +++|+..++++++++++++++...|.+|||+|||++||++|++++
T Consensus       288 ~~~~g~L~vi~L~p~lE~~l~~si~~~~-------~L~P~~~~~l~~~~~~~~~~~~~~g~~pVLlvs~~iR~~l~~ll~  360 (389)
T 3a5i_A          288 FPGNEEVQVIGLDTALERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR  360 (389)
T ss_dssp             SCTTCCEECBCCCTTHHHHHHHHHHSSS-------CCCTTHHHHHHHHHHHHHHHHHHHTCCCEEEECTTTHHHHHHHHT
T ss_pred             CCCCCCEEEEEECHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
T ss_conf             1767713899978799999999750568-------899799999999999999999965999799928517899999999


Q ss_pred             HHCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf             644898189440178996579888609
Q gi|254780512|r  666 RNFPSLAVLSHMEIAKGLKVNILGTIS  692 (692)
Q Consensus       666 ~~~p~l~VLS~~EI~~~~~i~~iG~Is  692 (692)
                      +++|+++||||+||+++++|+++|+|+
T Consensus       361 ~~~p~l~VLS~~EI~~~~~i~~vg~Ig  387 (389)
T 3a5i_A          361 RSLPQLVVLSNLELSDNRHIRMTATIG  387 (389)
T ss_dssp             TTCTTCEEEETTTSCTTCCEECCCCCS
T ss_pred             HHCCCCEEECHHHCCCCCEEEEEEEEC
T ss_conf             868998796355459997069999836