HHsearch results for GI: 254780512 and protein with PDBid: 3a5i_A
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like fold, bacterial flagellum BIO bacterial flagellum protein export; 2.80A {Salmonella typhimurium}
Probab=100.00 E-value=0 Score=751.23 Aligned_cols=338 Identities=25% Similarity=0.435 Sum_probs=328.0
Q ss_pred CCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEEEE
Q ss_conf 6753001002460122101-111123457552688999999999998098788324454377898716999748245348
Q gi|254780512|r 348 QHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAIS 426 (692)
Q Consensus 348 ~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va~g 426 (692)
+.+|+.....|++++++|| +++++|.+++++|++||+++||++|+||||++|+||||||++|+||+|+|+|+|+++++|
T Consensus 48 e~sw~dv~~vd~i~levGy~Li~lvd~~~gg~Ll~RI~~iRk~~a~elG~vvP~I~IrDnl~L~p~~Y~I~i~Gv~va~g 127 (389)
T 3a5i_A 48 EATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQDMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSG 127 (389)
T ss_dssp CCCGGGCCCCCSEEEEECGGGTTTTCSSSCCHHHHHHHHHHHHHHHHTSSCCCCEEEEECTTSCTTEEEEEETTEEEEEE
T ss_pred CCCHHHCCCCCEEEEEECCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCEEEEEE
T ss_conf 56621166555079997414286638778970899999999999997198789568971798999868999998999998
Q ss_pred EECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84178341330588876788741014766883034397884588828990705889999999999998799987299999
Q gi|254780512|r 427 ELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVK 506 (692)
Q Consensus 427 ei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qEvq 506 (692)
+++||++||+++++....++|++++||+||+||+||+++++++|+..|||||||.+||+||+++++|+||+||||+||||
T Consensus 128 ~l~p~~~Lai~~~~~~~~l~G~~t~ePafGl~A~WI~~~~~~~A~~~Gytvvd~~tViaTHL~evlr~~a~eLlgrqevq 207 (389)
T 3a5i_A 128 DAYPGRWLAINPGTAAGTLPGEKTVDPAFGLDAIWIESALKEQAQIQGFTVVEASTVVATHLNHLIGQFSAELFGRQEAQ 207 (389)
T ss_dssp ECCTTEEEEECCSSCCCCCSSEEEECSSSCCEEEEEESTTHHHHHHTTCEEEEHHHHHHHHHHHHHHHTTTTTCCHHHHH
T ss_pred EECCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 86377079888998757778732455689987288688777688767987971687999999999998699882899999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999766648999986311599899999999999749865469999999987533579989999999999899986520
Q gi|254780512|r 507 NLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDL 586 (692)
Q Consensus 507 ~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~ 586 (692)
+|||+++++||+||||++|+++|++.+|+|||+||+|+||||||++|||||+||++++|||+.||||||++|+||||++|
T Consensus 208 ~LLd~l~~~~p~LVeelvp~~lsl~~i~~VLq~LL~E~VsIRdl~tIlEtLae~a~~~kd~~~LtE~VR~aL~r~I~~~~ 287 (389)
T 3a5i_A 208 QLLDRVSQEMPKLTEDLVPGVVTLTTLHKVLQNLLAEKVPIRDMRTILETLAEHAPLQSDPHELTAVVRVALGRAITQQW 287 (389)
T ss_dssp HHHHHHHTTCHHHHHTTTTTTSCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHGGGCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999876657999975305779999999999999789628789999999998731579999999999999999999986
Q ss_pred CC-CCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH
Q ss_conf 77-88489998887899999998303777884645669889999999999999999956998799828335489999988
Q gi|254780512|r 587 AP-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILE 665 (692)
Q Consensus 587 ~~-~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~pVLl~s~~iRr~lr~lle 665 (692)
.+ +|.|+|++|+|+||+++++++++++ +++|+..++++++++++++++...|.+|||+|||++||++|++++
T Consensus 288 ~~~~g~L~vi~L~p~lE~~l~~si~~~~-------~L~P~~~~~l~~~~~~~~~~~~~~g~~pVLlvs~~iR~~l~~ll~ 360 (389)
T 3a5i_A 288 FPGNEEVQVIGLDTALERLLLQALQGGG-------GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLR 360 (389)
T ss_dssp SCTTCCEECBCCCTTHHHHHHHHHHSSS-------CCCTTHHHHHHHHHHHHHHHHHHHTCCCEEEECTTTHHHHHHHHT
T ss_pred CCCCCCEEEEEECHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHH
T ss_conf 1767713899978799999999750568-------899799999999999999999965999799928517899999999
Q ss_pred HHCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf 644898189440178996579888609
Q gi|254780512|r 666 RNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692)
Q Consensus 666 ~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692)
+++|+++||||+||+++++|+++|+|+
T Consensus 361 ~~~p~l~VLS~~EI~~~~~i~~vg~Ig 387 (389)
T 3a5i_A 361 RSLPQLVVLSNLELSDNRHIRMTATIG 387 (389)
T ss_dssp TTCTTCEEEETTTSCTTCCEECCCCCS
T ss_pred HHCCCCEEECHHHCCCCCEEEEEEEEC
T ss_conf 868998796355459997069999836