HHsearch results for GI: 254780512 and protein with PDBid: 3myd_A
>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III secretion, cytoplasmic FRAG protein transport; 2.40A {Helicobacter pylori}
Probab=100.00 E-value=0 Score=729.51 Aligned_cols=343 Identities=27% Similarity=0.450 Sum_probs=328.7
Q ss_pred CCCCCCCHHHCCCCCHHHHCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEECCEEEE
Q ss_conf 676753001002460122101-1111234575526889999999999980987883244543778987169997482453
Q gi|254780512|r 346 QNQHSAQLNFITSGVELVLGS-LVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVA 424 (692)
Q Consensus 346 ~~~~~~~~~~~~~~i~l~lg~-li~l~~~~~~~~L~~rI~~iRk~la~elG~~iP~IrIrDn~~L~~~~Y~I~I~Gv~va 424 (692)
+.+..+......|++++++|| +++++|.+++++|.+||+++||+++.||||++|+||||||.+|+||+|+|+|+|++++
T Consensus 17 ~~e~~~~~~l~vd~l~le~Gy~Li~lvd~~~g~~L~~rI~~iR~~la~elG~~lP~Irirdn~~L~~~~Y~I~i~gv~v~ 96 (365)
T 3myd_A 17 EEEQAIDEVLKIEFLELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIG 96 (365)
T ss_dssp -CCCHHHHHHCCCCEEEEECGGGGGGTCGGGTCCHHHHHHTHHHHHHHHHCCCCCCCEEEECTTSCTTEEEEEETTEEEE
T ss_pred CCCCCHHHCCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCEEEE
T ss_conf 43158655356670799975462855185669858999999999999980998895689857989998789998865676
Q ss_pred EEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48841783413305888767887410147668830343978845888289907058899999999999987999872999
Q gi|254780512|r 425 ISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKD 504 (692)
Q Consensus 425 ~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~~~~~a~~~G~tvvdp~~ViatHl~evir~~a~ellg~qE 504 (692)
+|+++||++||+++++....++|++++||+||++|+||+++++++|+.+|||+|||++|++||+++++|+||+||||+||
T Consensus 97 ~g~l~~~~~lai~~~~~~~~i~G~~~~eP~fgl~a~WI~~~~~~~a~~~G~tvvd~~~Vi~tHl~evi~~~a~ellgrqE 176 (365)
T 3myd_A 97 EGMVMPDKFLAMNTGFVNREIEGIPTKEPAFGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDE 176 (365)
T ss_dssp EEECCTTSEEEECSSCCSSCCCSEEEECTTTCCEEEEECGGGHHHHHHTTCEEECHHHHHHHHHHHHHHHTGGGGCCHHH
T ss_pred EEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 52036874773078765555788655687777661247876589999759858858999999999999996999859999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999997666489999863115998999999999997498654699999999875335-79989999999999899986
Q gi|254780512|r 505 VKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPH-SRKTSHIVEQVRIRMAQQIC 583 (692)
Q Consensus 505 vq~LLd~L~~~~P~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdlr~IlEaLad~a~~-~kD~~~LtE~VR~aL~R~I~ 583 (692)
||+|+|+++++||+|||| |+++|++++|+|||+||+|+|||||+++|||||+||+++ +||++.||||||++|+||||
T Consensus 177 v~~LLd~l~~~~p~LVeE--p~~v~l~~i~~VLq~LL~E~VsIRdl~~IlEaLad~a~~~~~d~~~LtE~VR~aL~r~I~ 254 (365)
T 3myd_A 177 VKSLLERLAKDYPTIVEE--SKKIPTGAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQVRARLSRVIT 254 (365)
T ss_dssp HHHHHHHHHTTCHHHHHH--GGGSCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHGGGGTTCHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHCHHHHHH--HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999997668688731--320889999999999997687073789999999987301469999999999999999999
Q ss_pred HHHC-CCCEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCE-EEEECHHHHHHHH
Q ss_conf 5207-7884899988878999999983037778846456698899999999999999999569987-9982833548999
Q gi|254780512|r 584 GDLA-PTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPL-TIVTLPEIRSYIR 661 (692)
Q Consensus 584 ~~~~-~~g~L~vi~L~p~lE~~l~~~i~~t~~G~~~~l~l~P~~~~~l~~~i~~~~~~~~~~g~~p-VLl~s~~iRr~lr 661 (692)
++|. ++|+|+|++|+|+||++++++++++++|++ ++++|+..+++++++++.++++...|..| ||+|||++||++|
T Consensus 255 ~~~~~~~g~L~vi~L~p~lE~~l~~~i~~~~~g~~--l~l~p~~~~~li~~v~~~~~~~~~~g~~pvVLl~s~~iRr~l~ 332 (365)
T 3myd_A 255 NAFKSEDGRLKFLTFSTDSEQFLLNKLRENGTSKS--LLLNVGELQKLIEGVSEEAMKVLQKGIAPVILIVEPNLRKALS 332 (365)
T ss_dssp HHHCCTTSEEEEEEECHHHHHHHHHTEEEETTEEE--ECCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECHHHHHHHH
T ss_pred HHHCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHH
T ss_conf 98558888359998188999999998742577775--4579899999999999999999965899989988887899999
Q ss_pred HHHHHHCCCCCEEEECCCCCCCEEEEEEEEC
Q ss_conf 9988644898189440178996579888609
Q gi|254780512|r 662 MILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 (692)
Q Consensus 662 ~lle~~~p~l~VLS~~EI~~~~~i~~iG~Is 692 (692)
+++++++|+++||||+||+++++++++|+|+
T Consensus 333 ~ll~~~~p~l~VLS~~EI~~~~~v~~~g~V~ 363 (365)
T 3myd_A 333 NQMEQARIDVVVLSHAELDPNSNFEALGTIH 363 (365)
T ss_dssp HHHHHHTCCEEEEEGGGCCTTSEEEEEEEEC
T ss_pred HHHHHHCCCCEEECHHHCCCCCEEEEEEEEE
T ss_conf 9999877998696214249997058999996