Query gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 692
No_of_seqs 160 out of 1034
Neff 5.9
Searched_HMMs 13730
Date Wed Jun 1 10:10:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780512.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jhna4 b.29.1.12 (A:61-262,A: 54.3 5 0.00036 16.1 3.4 45 410-465 185-229 (249)
2 d2pl1a1 c.23.1.1 (A:1-119) Pho 40.5 2.7 0.0002 18.1 -0.0 12 482-493 10-21 (119)
3 d1h16a_ c.7.1.1 (A:) Pyruvate 39.6 8.1 0.00059 14.6 2.4 49 567-617 573-624 (759)
4 d1m56d_ f.23.8.1 (D:) Bacteria 38.3 7.1 0.00052 15.0 1.8 19 197-215 17-35 (42)
5 d1qled_ f.23.8.1 (D:) Bacteria 37.3 7.5 0.00055 14.8 1.8 19 197-215 18-36 (43)
6 d1wi9a_ a.4.5.47 (A:) Hypothet 28.8 12 0.00086 13.3 3.7 52 133-204 12-63 (72)
7 d2gboa1 a.23.6.1 (A:1-82) Hypo 25.8 13 0.00096 13.0 3.1 32 158-189 48-79 (82)
8 d1wpga4 f.33.1.1 (A:1-124,A:24 25.7 11 0.00079 13.6 1.0 52 120-181 87-138 (472)
9 d1xhfa1 c.23.1.1 (A:2-122) Aer 25.0 5.3 0.00038 15.9 -0.7 17 478-494 8-24 (121)
10 d1zgza1 c.23.1.1 (A:2-121) Tor 24.5 6.9 0.0005 15.1 -0.2 11 629-639 107-117 (120)
11 d2hqva1 e.62.1.2 (A:11-186) Hy 23.8 5.7 0.00042 15.7 -0.7 26 414-439 83-108 (176)
12 d1orna_ a.96.1.1 (A:) Endonucl 22.4 15 0.0011 12.5 5.0 50 501-550 3-65 (214)
13 d2ihta2 c.36.1.5 (A:12-197) Ca 21.0 12 0.00088 13.3 0.5 40 548-587 112-151 (186)
14 d1oi7a1 c.2.1.8 (A:1-121) Succ 20.8 16 0.0012 12.3 2.6 18 542-559 96-113 (121)
No 1
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]}
Probab=54.27 E-value=5 Score=16.15 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=33.4
Q ss_pred CCCEEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCEEECCHH
Q ss_conf 98716999748245348841783413305888767887410147668830343978
Q gi|254780512|r 410 PEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMES 465 (692)
Q Consensus 410 ~~~~Y~I~I~Gv~va~gei~~~~lLai~~~~~~~~l~G~~~~eP~fgl~A~WI~~~ 465 (692)
+.|+|.|+|+|.++-.|.+.+..+ .+--+..||....|+-|++.+
T Consensus 185 pdntfeI~iDg~~~~~G~le~~~~-----------~p~~~i~dp~~~KP~DW~d~~ 229 (249)
T d1jhna4 185 PDNSFEILVDQSIVNSGNLEPFKM-----------TPFSAIGLELWSMTSDIFFDN 229 (249)
T ss_dssp TTTEEEEEETTEEEEEECCCTTCC-----------CCEEEEEECCCCSSSCCBCEE
T ss_pred CCCEEEEEECCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCC
T ss_conf 998599976880412777676668-----------981337884557877854415
No 2
>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}
Probab=40.50 E-value=2.7 Score=18.14 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780512|r 482 AVVLTHLSEVIR 493 (692)
Q Consensus 482 ~ViatHl~evir 493 (692)
..+...+.+.++
T Consensus 10 ~~~~~~l~~~L~ 21 (119)
T d2pl1a1 10 ALLRHHLKVQIQ 21 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 3
>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli [TaxId: 562]}
Probab=39.57 E-value=8.1 Score=14.55 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCE--EEEEEECHHHHHHHHHHHHCCCCCCC
Q ss_conf 8999999999989998652077-884--89998887899999998303777884
Q gi|254780512|r 567 TSHIVEQVRIRMAQQICGDLAP-TGI--LNILKLGNHWDMIFYQAIQRDSKGEC 617 (692)
Q Consensus 567 ~~~LtE~VR~aL~R~I~~~~~~-~g~--L~vi~L~p~lE~~l~~~i~~t~~G~~ 617 (692)
.|.++..+=....+.|.+.... ++. ..+++++.. -..-...-.|+.|..
T Consensus 573 vD~ia~~i~~~~~~~i~~~~~~rg~~~~~~~ltitsn--V~~G~~tGATPDGR~ 624 (759)
T d1h16a_ 573 VDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSN--VVYGKKTGNTPDGRR 624 (759)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCGGGCEEEEEECCTTHH--HHHHHTCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHEE--HHHHCCCCCCCCCCC
T ss_conf 8899999999999999645788998300556550103--642263255989673
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=38.34 E-value=7.1 Score=14.99 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=14.2
Q ss_pred CCHHHHHCCHHHHHHHHHH
Q ss_conf 2013453010589999999
Q gi|254780512|r 197 DGASKFVRGDAIASIIITA 215 (692)
Q Consensus 197 DGA~KFVkGDAiAgiiI~~ 215 (692)
||=+|||+--+|+-|++++
T Consensus 17 ~gFik~~t~~~i~~i~~li 35 (42)
T d1m56d_ 17 AGFVRMVTWAAVVIVAALI 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 5
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=37.34 E-value=7.5 Score=14.80 Aligned_cols=19 Identities=26% Similarity=0.079 Sum_probs=14.1
Q ss_pred CCHHHHHCCHHHHHHHHHH
Q ss_conf 2013453010589999999
Q gi|254780512|r 197 DGASKFVRGDAIASIIITA 215 (692)
Q Consensus 197 DGA~KFVkGDAiAgiiI~~ 215 (692)
||=+|||+--+|+.|++++
T Consensus 18 ~gFi~~~t~~~i~~i~~li 36 (43)
T d1qled_ 18 AGFIKGATWVSILSIAVLV 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 6
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.79 E-value=12 Score=13.33 Aligned_cols=52 Identities=23% Similarity=0.412 Sum_probs=42.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHC
Q ss_conf 999988645751466655454420376034547878764899989999999999865222201220134530
Q gi|254780512|r 133 TINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAKRRRKELEEESAFFGAMDGASKFVR 204 (692)
Q Consensus 133 ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~I~~~eA~~rR~~l~~Es~fyGaMDGA~KFVk 204 (692)
-||||. .|---.+-|.||.|-| ..+++..|=++|+.+--..|-||---||+-
T Consensus 12 FI~~Ik-~~Kvv~LedLAa~F~l-------------------ktqd~i~RIq~Le~~g~ltGViDDRGKfIy 63 (72)
T d1wi9a_ 12 FINYIK-KSKVVLLEDLAFQMGL-------------------RTQDAINRIQDLLTEGTLTGVIDDRGKFIY 63 (72)
T ss_dssp HHHHHH-HCSEECHHHHHHHHCS-------------------CHHHHHHHHHHHHHHSSSCEEECTTCCEEE
T ss_pred HHHHHH-HCCEEEHHHHHHHCCC-------------------CHHHHHHHHHHHHHCCCEEEEECCCCCEEE
T ss_conf 999999-8787639999988299-------------------679999999999987986557858988899
No 7
>d2gboa1 a.23.6.1 (A:1-82) Hypothetical protein EF2458 {Enterococcus faecalis [TaxId: 1351]}
Probab=25.84 E-value=13 Score=12.97 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 76034547878764899989999999999865
Q gi|254780512|r 158 IPGKQMAIDADLSSGLIEEEEAKRRRKELEEE 189 (692)
Q Consensus 158 mPGKQMaIDaDl~aG~I~~~eA~~rR~~l~~E 189 (692)
|=|=+=-||=-.|.|+|++++-|+-=.+||+|
T Consensus 48 MfGlsrEidFAvrlgli~~~~Gk~ll~~LEre 79 (82)
T d2gboa1 48 MYGFSRQVTYATRLGILTNDEGHRLLSDLERE 79 (82)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 72312453477873666377779999999988
No 8
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=25.68 E-value=11 Score=13.60 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 26999999999999999886457514666554544203760345478787648999899999
Q gi|254780512|r 120 DFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAKR 181 (692)
Q Consensus 120 n~vvG~viF~Il~ivqfiVItkGa~RvaEV~ARFtLDamPGKQMaIDaDl~aG~I~~~eA~~ 181 (692)
+++-|++|+.++.+--++- =+-|..|.=++|++ |+| +.....|..++.|.|-
T Consensus 87 ~~~~~~~I~~vv~~n~~i~------~~qe~~a~~~~~~l--~~~--~~~~~~~~~~P~d~~l 138 (472)
T d1wpga4 87 AFVEPFVILLILIANAIVG------VWQERNAENAIEAL--KEY--EPAATEQDKTPLQQKL 138 (472)
T ss_dssp SSHHHHHHHHHHHHHHHHH------HHHHHSCCCHHHHH--GGG--SCCCCCCCCCHHHHHH
T ss_pred HHHHHHHHHHEEEEEEEEE------EEEECHHHHHHHHH--HHH--CCCCCCCCCCHHHHHH
T ss_conf 3767666311244652577------67750177788877--521--2223566586488899
No 9
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.99 E-value=5.3 Score=15.95 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=5.8
Q ss_pred ECHHHHHHHHHHHHHHH
Q ss_conf 05889999999999998
Q gi|254780512|r 478 IDNLAVVLTHLSEVIRN 494 (692)
Q Consensus 478 vdp~~ViatHl~evir~ 494 (692)
||....+..++.+.+++
T Consensus 8 VDDd~~~~~~l~~~L~~ 24 (121)
T d1xhfa1 8 VEDELVTRNTLKSIFEA 24 (121)
T ss_dssp ECSCHHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHHH
T ss_conf 98999999999999998
No 10
>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.49 E-value=6.9 Score=15.07 Aligned_cols=11 Identities=9% Similarity=0.018 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780512|r 629 MFSENATNSIR 639 (692)
Q Consensus 629 ~l~~~i~~~~~ 639 (692)
.+...+++.++
T Consensus 107 ~L~~~i~~~lr 117 (120)
T d1zgza1 107 ELVVRVKNLLW 117 (120)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
T ss_conf 99999999971
No 11
>d2hqva1 e.62.1.2 (A:11-186) Hypothetical protein AGR_C_4470p {Agrobacterium tumefaciens [TaxId: 358]}
Probab=23.83 E-value=5.7 Score=15.68 Aligned_cols=26 Identities=8% Similarity=-0.197 Sum_probs=11.6
Q ss_pred EEEEECCEEEEEEEECCCCEEEECCC
Q ss_conf 69997482453488417834133058
Q gi|254780512|r 414 YTIRVYGTTVAISELRVGEVLVILGS 439 (692)
Q Consensus 414 Y~I~I~Gv~va~gei~~~~lLai~~~ 439 (692)
+.|...--++-.+...-+.+..++++
T Consensus 83 ~~V~E~~G~~~~~~~~~g~~nl~~~~ 108 (176)
T d2hqva1 83 DIVLEVPGHLPEGTESHGWFNIHGDS 108 (176)
T ss_dssp SCEEEEEECCCCEEEETTEEEECSSS
T ss_pred CEEEEEEECCCCCEECCCEEEEECCC
T ss_conf 67999971578842057446773388
No 12
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=22.37 E-value=15 Score=12.50 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 29999999999766648-------------999986311599899999999999749865469
Q gi|254780512|r 501 SYKDVKNLISRLDPEYQ-------------KLAEETCSSHISYSGIQAVLKLLLAEHVSIRNL 550 (692)
Q Consensus 501 g~qEvq~LLd~L~~~~P-------------~LV~Elvp~~v~l~~i~~VLq~LL~E~VsIRdl 550 (692)
..+.++.++++|.+.|| .||.+++-.+-+...+.++.++|.+.--++.++
T Consensus 3 ~~~~~~~~~~~l~~~y~~~~~~l~~~dp~~vLVs~iLsqqT~~~~v~~~~~~l~~~~pt~~~l 65 (214)
T d1orna_ 3 TKQQIRYCLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDY 65 (214)
T ss_dssp CHHHHHHHHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 889999999999997799999888899799999999985191999988875221035754655
No 13
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=21.03 E-value=12 Score=13.27 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4699999999875335799899999999998999865207
Q gi|254780512|r 548 RNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLA 587 (692)
Q Consensus 548 Rdlr~IlEaLad~a~~~kD~~~LtE~VR~aL~R~I~~~~~ 587 (692)
-|...+++.+..|+.+-.+++.+.|.+|.+++...+.+..
T Consensus 112 ~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~a~s~~~G 151 (186)
T d2ihta2 112 LDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVG 151 (186)
T ss_dssp CCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCC
T ss_pred CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 1123566784441223677412016999999998669990
No 14
>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}
Probab=20.81 E-value=16 Score=12.28 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=11.1
Q ss_pred HCCCCHHHHHHHHHHHHH
Q ss_conf 749865469999999987
Q gi|254780512|r 542 AEHVSIRNLPLILESIAE 559 (692)
Q Consensus 542 ~E~VsIRdlr~IlEaLad 559 (692)
.|+||++|+..+.+.+-+
T Consensus 96 TEgVPv~Dm~~i~~~~~~ 113 (121)
T d1oi7a1 96 TEGIPTLDMVRAVEEIKA 113 (121)
T ss_dssp CSCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 599987999999999976
Done!