RPSBLAST alignment for GI: 254780512 and conserved domain: TIGR01398

>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. Length = 678
 Score =  796 bits (2059), Expect = 0.0
 Identities = 318/679 (46%), Positives = 448/679 (65%), Gaps = 9/679 (1%)

Query: 19  DFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLI 78
           D   +  +V I+ ++ LP+P  LLD+ LA +IALS+LIL+V L+I+KPL+FSSFPT+LLI
Sbjct: 3   DLLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFIQKPLDFSSFPTLLLI 62

Query: 79  VTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIV 138
            T+ RLSLN+A+TR IL+ GHEG  AAG +I  F   V+ G++VIGL+VF+ILI +NFIV
Sbjct: 63  ATLFRLSLNVASTRLILTHGHEGPNAAGKVIEAFGQFVVGGNYVIGLIVFIILIIVNFIV 122

Query: 139 ITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAKRRRKELEEESAFFGAMDG 198
           ITKGATRIAEV ARFTLDA+PGKQMAIDADL++GLI EEEAK+RR+ELE+E+ F+GAMDG
Sbjct: 123 ITKGATRIAEVAARFTLDAMPGKQMAIDADLNAGLITEEEAKKRREELEQEADFYGAMDG 182

Query: 199 ASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPALII 258
           ASKFV+GDAIA IIIT INI+GG++IG  ++ MS+  AA  +  L++GDGLV+Q+PALII
Sbjct: 183 ASKFVKGDAIAGIIITLINIIGGLIIGVVQHGMSLSDAASTYTILTIGDGLVAQIPALII 242

Query: 259 SLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFF 318
           S +   +V+R +S+GS   AIV QL   PRALLI A  + +L+++P LP FPF+ L G  
Sbjct: 243 STATGLIVTRASSEGSFGKAIVTQLGANPRALLIVAAVLGLLALVPGLPTFPFLFLAGAL 302

Query: 319 ACAGFYVPY----KNELQRLAKVAQIQEASKQNQHSAQLNFITSGVELVLGSLVSNRLLS 374
           A   +Y+      + E    A  AQ +EA+++ + S         +EL LG  +   +  
Sbjct: 303 AFLAWYLRRRSKQEEEAAAEAAKAQ-EEAAEEEEESINDILALDDLELELGYGLIPLVDD 361

Query: 375 SQ-EDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEV 433
           SQ  DL  R+  IR++ A +YGF++P I++  ++ LP   Y I++ G  VA  ELR G+ 
Sbjct: 362 SQGGDLLDRIRSIRKQLAQEYGFVMPVIRIRDNLRLPPNEYRIKIKGVEVARGELRPGKY 421

Query: 434 LVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIR 493
           L +         PG+E +EPAFG+PA+ I E   ++  R G+  +D   V+ THLSEVI+
Sbjct: 422 LAMNPGNADGEIPGEETREPAFGLPAYWISEKNKEEAERLGYTVVDPATVLATHLSEVIK 481

Query: 494 NNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLI 553
           NN ++LL+ ++V+NL+ RL  EY KL EE     +    IQ VL+LLL E VSIRNLP I
Sbjct: 482 NNAAELLTRQEVQNLLDRLKEEYPKLVEELIPDKVPLGTIQKVLQLLLRERVSIRNLPTI 541

Query: 554 LESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPT-GILNILKLGNHWDMIFYQAIQRD 612
           LE++A+ AP ++    +VE VR R+ +QI        G+L ++ L    +    +A+QRD
Sbjct: 542 LETLADYAPITKDPDLLVEHVRQRLGRQITQQYLDEDGVLPVITLDPDLEAALAEALQRD 601

Query: 613 SKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLA 672
            +GE +D   EP  +E        ++ +  + G    ++T P +R Y+R ILER FP L 
Sbjct: 602 GEGELLDL--EPALLEELVRAVRKAVEKLANNGERPVLLTSPRVRPYVRRILERFFPELP 659

Query: 673 VLSHMEIAKGLKVNILGTI 691
           VLS+ EI   ++V  +G +
Sbjct: 660 VLSYNEIPDNVRVETVGVV 678