RPSBLAST alignment for GI: 254780512 and conserved domain: TIGR01398
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model. Length = 678
Score = 796 bits (2059), Expect = 0.0
Identities = 318/679 (46%), Positives = 448/679 (65%), Gaps = 9/679 (1%)
Query: 19 DFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLI 78
D + +V I+ ++ LP+P LLD+ LA +IALS+LIL+V L+I+KPL+FSSFPT+LLI
Sbjct: 3 DLLLAIGVVAILAVMILPLPAFLLDILLALNIALSLLILLVTLFIQKPLDFSSFPTLLLI 62
Query: 79 VTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIV 138
T+ RLSLN+A+TR IL+ GHEG AAG +I F V+ G++VIGL+VF+ILI +NFIV
Sbjct: 63 ATLFRLSLNVASTRLILTHGHEGPNAAGKVIEAFGQFVVGGNYVIGLIVFIILIIVNFIV 122
Query: 139 ITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAKRRRKELEEESAFFGAMDG 198
ITKGATRIAEV ARFTLDA+PGKQMAIDADL++GLI EEEAK+RR+ELE+E+ F+GAMDG
Sbjct: 123 ITKGATRIAEVAARFTLDAMPGKQMAIDADLNAGLITEEEAKKRREELEQEADFYGAMDG 182
Query: 199 ASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPALII 258
ASKFV+GDAIA IIIT INI+GG++IG ++ MS+ AA + L++GDGLV+Q+PALII
Sbjct: 183 ASKFVKGDAIAGIIITLINIIGGLIIGVVQHGMSLSDAASTYTILTIGDGLVAQIPALII 242
Query: 259 SLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFF 318
S + +V+R +S+GS AIV QL PRALLI A + +L+++P LP FPF+ L G
Sbjct: 243 STATGLIVTRASSEGSFGKAIVTQLGANPRALLIVAAVLGLLALVPGLPTFPFLFLAGAL 302
Query: 319 ACAGFYVPY----KNELQRLAKVAQIQEASKQNQHSAQLNFITSGVELVLGSLVSNRLLS 374
A +Y+ + E A AQ +EA+++ + S +EL LG + +
Sbjct: 303 AFLAWYLRRRSKQEEEAAAEAAKAQ-EEAAEEEEESINDILALDDLELELGYGLIPLVDD 361
Query: 375 SQ-EDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEV 433
SQ DL R+ IR++ A +YGF++P I++ ++ LP Y I++ G VA ELR G+
Sbjct: 362 SQGGDLLDRIRSIRKQLAQEYGFVMPVIRIRDNLRLPPNEYRIKIKGVEVARGELRPGKY 421
Query: 434 LVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIR 493
L + PG+E +EPAFG+PA+ I E ++ R G+ +D V+ THLSEVI+
Sbjct: 422 LAMNPGNADGEIPGEETREPAFGLPAYWISEKNKEEAERLGYTVVDPATVLATHLSEVIK 481
Query: 494 NNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLI 553
NN ++LL+ ++V+NL+ RL EY KL EE + IQ VL+LLL E VSIRNLP I
Sbjct: 482 NNAAELLTRQEVQNLLDRLKEEYPKLVEELIPDKVPLGTIQKVLQLLLRERVSIRNLPTI 541
Query: 554 LESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPT-GILNILKLGNHWDMIFYQAIQRD 612
LE++A+ AP ++ +VE VR R+ +QI G+L ++ L + +A+QRD
Sbjct: 542 LETLADYAPITKDPDLLVEHVRQRLGRQITQQYLDEDGVLPVITLDPDLEAALAEALQRD 601
Query: 613 SKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLA 672
+GE +D EP +E ++ + + G ++T P +R Y+R ILER FP L
Sbjct: 602 GEGELLDL--EPALLEELVRAVRKAVEKLANNGERPVLLTSPRVRPYVRRILERFFPELP 659
Query: 673 VLSHMEIAKGLKVNILGTI 691
VLS+ EI ++V +G +
Sbjct: 660 VLSYNEIPDNVRVETVGVV 678