RPSBLAST alignment for GI: 254780512 and conserved domain: TIGR01399

>gnl|CDD|162339 TIGR01399, hrcV, type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. Length = 677
 Score =  454 bits (1169), Expect = e-128
 Identities = 231/683 (33%), Positives = 370/683 (54%), Gaps = 17/683 (2%)

Query: 18  HDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLL 77
            D   +  ++ II ++ LP+PT+L+D+ +A +I +S+L+LM+A++I +PL  S+FP+VLL
Sbjct: 3   SDLVLALLLLAIISMMILPLPTLLVDILIAINITISVLLLMIAIYIPRPLALSTFPSVLL 62

Query: 78  IVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFI 137
           I T+ RL+L+I+TTR IL      +  AG II  F   V+ G+  +GLV+F+I+  + FI
Sbjct: 63  ITTLFRLALSISTTRLILL-----HADAGNIIEAFGQFVVGGNLAVGLVIFLIITIVQFI 117

Query: 138 VITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAKRRRKELEEESAFFGAMD 197
           VITKG+ R+AEV ARF+LDA+PGKQM+IDADL +G+I+ +EA+RRR  LE+ES  +GAMD
Sbjct: 118 VITKGSERVAEVSARFSLDAMPGKQMSIDADLRAGVIDADEARRRRSTLEKESQLYGAMD 177

Query: 198 GASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPALI 257
           GA KFV+GDAIA III  INI+GGI IG  ++ MS   A  ++  L++GDGLVSQ+PAL+
Sbjct: 178 GAMKFVKGDAIAGIIIVLINIIGGISIGVTQHGMSASEALHLYTVLTIGDGLVSQIPALL 237

Query: 258 ISLSAAFLVSRTTSKGSTNTA--IVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLG 315
           IS++A  +V+R   +   N    I  QL+  PRALL++A  ++  +++P  P   F +L 
Sbjct: 238 ISVTAGIIVTRVPGEAERNLGREIGHQLTSQPRALLLAAVLLLGFALIPGFPLLVFALLA 297

Query: 316 GFFACAGFY--VPYKNELQRLAKVAQIQEASKQNQHSAQLNFITSGVELVLGSLVSNRLL 373
              A AG+      ++  +     A    AS     +   N         L   +S  L 
Sbjct: 298 VLLAAAGYLLSRRKRSRAKANKAQASGAVASAPGAAAPIKNLDPFAEACPLILRLSPDLQ 357

Query: 374 SS--QEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVG 431
           SS  ++ L   + ++R       G  +P I +    SLP+  + I +Y   V    +  G
Sbjct: 358 SSADKDTLDQEIERMRWALFEDLGIPLPGIIIRVGDSLPDNEFRILLYEVPVLRDTIPPG 417

Query: 432 EVLVILGSGQKPTF-PGDEVKEPAFGM-PAFAIMESFSDDLRRQGFHPIDNLAVVLTHLS 489
            V +  G              +   G      + E  ++ L+  G     +  V+   L 
Sbjct: 418 HVALNDGVDNIEVAGIPAISGKRWPGESQRVWVTEEGAEKLQGAGLGYFSDSQVITHRLK 477

Query: 490 EVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRN 549
             +  N  + +  ++ + L+ +++ EY +L +E     +    I  VL+ L++E VSIRN
Sbjct: 478 ATLLRNAQEFIGIQETRYLLDQMEREYPELVKEV-QRVLPLQRIAEVLQRLVSEQVSIRN 536

Query: 550 LPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTG-ILNILKLGNHWDMIFYQA 608
           L LILE++ E A   +    + E VRI + + IC   A  G  L+ + +    + +   A
Sbjct: 537 LRLILETLIEWAQREKDVVMLTEYVRIALKRYICHRYANGGRQLSAVLIDPEIEELIRGA 596

Query: 609 IQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNF 668
           I++ S G      ++P   E   +    ++           ++T  +IR Y+R ++E  F
Sbjct: 597 IRQTSTGTY--LALDPDDSEQLLDQIRQAVGDLPRAPSQPVLLTSMDIRRYVRKMIESEF 654

Query: 669 PSLAVLSHMEIAKGLKVNILGTI 691
           P L VLS+ E+ + ++V +LG I
Sbjct: 655 PDLPVLSYQELGEEIEVQVLGRI 677