RPSBLAST alignment for GI: 254780512 and conserved domain: COG1298

>gnl|CDD|31489 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]. Length = 696
 Score =  748 bits (1934), Expect = 0.0
 Identities = 308/698 (44%), Positives = 443/698 (63%), Gaps = 11/698 (1%)

Query: 1   MIQSLIGISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVA 60
            + S +    + D     D A    IVLI+ +L LP+P  LLD  L  +IALS+LIL+VA
Sbjct: 2   NLASKLRFPGNLDGLQGKDLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVA 61

Query: 61  LWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGD 120
           ++I++PL+FSSFPT+LLI T++RL LN+A+TR ILS GHE   AAG +I  F + V+ G+
Sbjct: 62  MFIQRPLDFSSFPTLLLITTLLRLGLNVASTRVILSHGHE---AAGKVIEAFGNFVVGGN 118

Query: 121 FVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAK 180
           FVIGL+VF+ILI +NFIVITKGA RIAEV ARFTLDA+PGKQMAIDADL++GLI EEEAK
Sbjct: 119 FVIGLIVFLILIIVNFIVITKGAERIAEVAARFTLDAMPGKQMAIDADLNAGLITEEEAK 178

Query: 181 RRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVF 240
           +RR ELE+E+ F+GAMDGASKFV+GDAIA III AINI+GG++IG  ++ MS   AA+ +
Sbjct: 179 KRRSELEQEADFYGAMDGASKFVKGDAIAGIIILAINIIGGLLIGVLQHGMSFGEAAETY 238

Query: 241 VRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVL 300
             L++GDGLVSQ+PAL+IS +A  +V+R ++  S    +  QL   P+ LLI+A  + +L
Sbjct: 239 TLLTIGDGLVSQIPALLISTAAGIIVTRVSTDESLGQQLFTQLFANPKVLLIAAGVLFLL 298

Query: 301 SVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKVAQIQEASKQNQHSAQLNFI---- 356
            ++P +P  PF++L G  A   + +  + E Q   K    +EA K+ +   + +      
Sbjct: 299 GLIPGMPHLPFLLLAGLLAFLAYLLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLL 358

Query: 357 TSGVELVLGSLVSNRLLSSQ-EDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYT 415
              +EL LG  +   +   Q  +L  R+  IR+K A + GF+VP I++  ++ L    Y 
Sbjct: 359 IDPIELELGYGLIPLVDEQQGGELLDRIRGIRKKIAQELGFVVPVIRIRDNLRLKPNSYR 418

Query: 416 IRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGF 475
           I++ G  VA  ELR G++L I   G     PG+E K+PAFG+PA+ I E   ++ +  G+
Sbjct: 419 IKIKGVEVASGELRPGKLLAINPGGVTGEIPGEETKDPAFGLPAYWIEEDQKEEAQILGY 478

Query: 476 HPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQA 535
             +D  +V+ THLSEVIRN+  +LL  ++V+ L+ RL  EY KL EE     IS S +Q 
Sbjct: 479 TVVDPSSVIATHLSEVIRNHAHELLGRQEVQQLLDRLAEEYPKLVEEIVPKKISLSTLQK 538

Query: 536 VLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNI 594
           VL+ LL E VSIR+LP ILE++A+ AP ++    + E+VR  + +QI   L    G L +
Sbjct: 539 VLQNLLKERVSIRDLPTILETLADYAPITKDPDELTEKVRQALGRQITQQLLDENGELEV 598

Query: 595 LKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLP 654
           + L    + +   ++Q+   GE  +  ++P  +E         + +   KG P  ++  P
Sbjct: 599 ITLDPSLEQLLLNSLQKG--GELDELPLDPDLLEKLIRQVKEELERVEQKGFPPVLLVSP 656

Query: 655 EIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692
           E+R Y+R ILER FP L VLSH E+   +++ ILGT+S
Sbjct: 657 ELRPYLRRILERYFPDLVVLSHNELPDNIEIKILGTVS 694