RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein
FlhA [Candidatus Liberibacter asiaticus str. psy62]
(692 letters)
>gnl|CDD|144389 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 768 bits (1986), Expect = 0.0
Identities = 282/663 (42%), Positives = 415/663 (62%), Gaps = 10/663 (1%)
Query: 28 LIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLN 87
I+ ++ LP+P LLD+ LA +IALS+LIL+VAL+I++PL+FSSFP++LLI T+ RL+LN
Sbjct: 1 AILAMMILPLPPFLLDLLLAFNIALSLLILLVALYIKRPLDFSSFPSLLLITTLFRLALN 60
Query: 88 IATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIA 147
+A+TR IL EG+ AAG +I F V+ G+ V+GLVVF+IL+ +NFIVITKGA R+A
Sbjct: 61 VASTRLILL---EGHDAAGKVIEAFGEFVVGGNLVVGLVVFLILVIVNFIVITKGAERVA 117
Query: 148 EVGARFTLDAIPGKQMAIDADLSSGLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDA 207
EV ARFTLDA+PGKQMAIDADL++GLI+EEEA+RRR+ELE E+ F+GAMDGASKFV+GDA
Sbjct: 118 EVAARFTLDAMPGKQMAIDADLNAGLIDEEEARRRREELEREADFYGAMDGASKFVKGDA 177
Query: 208 IASIIITAINIVGGIVIGCFRYDMSIHHAADVFVRLSVGDGLVSQVPALIISLSAAFLVS 267
IA IIIT INI+GG++IG ++ MS AA + L++GDGLVSQ+PAL+IS +A +V+
Sbjct: 178 IAGIIITLINIIGGLIIGVLQHGMSFGEAAQTYTLLTIGDGLVSQIPALLISTAAGIIVT 237
Query: 268 RTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPY 327
R +S+G+ IV QL P+AL I+A +++L ++P +P PF++L + +
Sbjct: 238 RVSSEGNLGEEIVGQLFANPKALYIAAGVLLLLGLVPGMPTLPFLLLAALLGGLAYRLSK 297
Query: 328 KNELQRLAKVAQIQEA-SKQNQHSAQLNFITSG--VELVLG-SLVSNRLLSSQEDLFLRV 383
+ + A+ EA + + + +EL LG L+ + DL R+
Sbjct: 298 RKRQEAAEAEAEAAEAEAAAEPEEESWDDVLPVDPLELELGYGLIPLVDPNQGGDLLDRI 357
Query: 384 SKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKP 443
IRR+ A + GF++P I++ ++ LP Y I + G VA ELR +L I G
Sbjct: 358 KGIRRQLAQELGFVLPPIRIRDNLQLPPNEYRILLKGVEVARGELRPDRLLAIDPGGVLG 417
Query: 444 TFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYK 503
PG KEPAFG+PA I ++ G+ +D V+ THLSEV+R + ++LL +
Sbjct: 418 EIPGIPTKEPAFGLPAVWIDPDQREEAEAAGYTVVDPATVIATHLSEVLRRHAAELLGRQ 477
Query: 504 DVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPH 563
+V+ L+ RL+ EY KL EE + IQ VL+ LL E VSIR+L ILE++AE AP
Sbjct: 478 EVQKLLDRLEKEYPKLVEELVPKLLPLGRIQKVLQNLLKERVSIRDLRTILEALAEWAPK 537
Query: 564 SRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGECVDFNV 622
++ + E VR + +QI A G L ++ L + + +I++ G +
Sbjct: 538 TKDPDLLTEYVRQALGRQIVQQYADEDGTLPVITLDPELEQLLRDSIRQTEGGS--YLAL 595
Query: 623 EPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAKG 682
+P E E+ ++ + +G P ++T P+IR ++R +LER FP L VLS+ EI
Sbjct: 596 DPDLAERLLESVREALEKLAAQGAPPVLLTSPDIRRFLRRLLERFFPDLPVLSYNEIPPE 655
Query: 683 LKV 685
+++
Sbjct: 656 VEI 658
>gnl|CDD|31489 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 748 bits (1934), Expect = 0.0
Identities = 308/698 (44%), Positives = 443/698 (63%), Gaps = 11/698 (1%)
Query: 1 MIQSLIGISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVA 60
+ S + + D D A IVLI+ +L LP+P LLD L +IALS+LIL+VA
Sbjct: 2 NLASKLRFPGNLDGLQGKDLAVPLGIVLILAMLILPLPAFLLDFLLTFNIALSVLILLVA 61
Query: 61 LWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGD 120
++I++PL+FSSFPT+LLI T++RL LN+A+TR ILS GHE AAG +I F + V+ G+
Sbjct: 62 MFIQRPLDFSSFPTLLLITTLLRLGLNVASTRVILSHGHE---AAGKVIEAFGNFVVGGN 118
Query: 121 FVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAK 180
FVIGL+VF+ILI +NFIVITKGA RIAEV ARFTLDA+PGKQMAIDADL++GLI EEEAK
Sbjct: 119 FVIGLIVFLILIIVNFIVITKGAERIAEVAARFTLDAMPGKQMAIDADLNAGLITEEEAK 178
Query: 181 RRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVF 240
+RR ELE+E+ F+GAMDGASKFV+GDAIA III AINI+GG++IG ++ MS AA+ +
Sbjct: 179 KRRSELEQEADFYGAMDGASKFVKGDAIAGIIILAINIIGGLLIGVLQHGMSFGEAAETY 238
Query: 241 VRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVL 300
L++GDGLVSQ+PAL+IS +A +V+R ++ S + QL P+ LLI+A + +L
Sbjct: 239 TLLTIGDGLVSQIPALLISTAAGIIVTRVSTDESLGQQLFTQLFANPKVLLIAAGVLFLL 298
Query: 301 SVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKVAQIQEASKQNQHSAQLNFI---- 356
++P +P PF++L G A + + + E Q K +EA K+ + + +
Sbjct: 299 GLIPGMPHLPFLLLAGLLAFLAYLLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLL 358
Query: 357 TSGVELVLGSLVSNRLLSSQ-EDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYT 415
+EL LG + + Q +L R+ IR+K A + GF+VP I++ ++ L Y
Sbjct: 359 IDPIELELGYGLIPLVDEQQGGELLDRIRGIRKKIAQELGFVVPVIRIRDNLRLKPNSYR 418
Query: 416 IRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGF 475
I++ G VA ELR G++L I G PG+E K+PAFG+PA+ I E ++ + G+
Sbjct: 419 IKIKGVEVASGELRPGKLLAINPGGVTGEIPGEETKDPAFGLPAYWIEEDQKEEAQILGY 478
Query: 476 HPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQA 535
+D +V+ THLSEVIRN+ +LL ++V+ L+ RL EY KL EE IS S +Q
Sbjct: 479 TVVDPSSVIATHLSEVIRNHAHELLGRQEVQQLLDRLAEEYPKLVEEIVPKKISLSTLQK 538
Query: 536 VLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNI 594
VL+ LL E VSIR+LP ILE++A+ AP ++ + E+VR + +QI L G L +
Sbjct: 539 VLQNLLKERVSIRDLPTILETLADYAPITKDPDELTEKVRQALGRQITQQLLDENGELEV 598
Query: 595 LKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLP 654
+ L + + ++Q+ GE + ++P +E + + KG P ++ P
Sbjct: 599 ITLDPSLEQLLLNSLQKG--GELDELPLDPDLLEKLIRQVKEELERVEQKGFPPVLLVSP 656
Query: 655 EIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692
E+R Y+R ILER FP L VLSH E+ +++ ILGT+S
Sbjct: 657 ELRPYLRRILERYFPDLVVLSHNELPDNIEIKILGTVS 694
>gnl|CDD|34399 COG4789, EscV, Type III secretory pathway, component EscV
[Intracellular trafficking and secretion].
Length = 689
Score = 440 bits (1132), Expect = e-124
Identities = 237/701 (33%), Positives = 379/701 (54%), Gaps = 25/701 (3%)
Query: 1 MIQSLIGISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVA 60
M+ L+ S D + +++ + ++ LP+PTVL+D+ +A ++ LS+L+LMV+
Sbjct: 1 MLNKLLNRIRSR-----PDLILALLLLMAVAMMILPLPTVLVDILIAINLTLSVLLLMVS 55
Query: 61 LWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGD 120
++I PL S FP++LLI T+ RL+L+I+TTR IL AG II F V+ G+
Sbjct: 56 IYIPSPLSLSVFPSLLLITTLFRLALSISTTRLILL-----EADAGEIIYSFGDFVVGGN 110
Query: 121 FVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAK 180
V+G V+F+I+ + FIVITKG+ R+AEV ARF+LD +PGKQM+IDADL +G+I+ +EA+
Sbjct: 111 LVVGFVIFLIITIVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLRAGVIDADEAR 170
Query: 181 RRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVF 240
RR LE+ES +G+MDGA KFV+GDAIA III +NI+GGI IG ++ MS A ++
Sbjct: 171 ERRAVLEKESQLYGSMDGAMKFVKGDAIAGIIIILVNIIGGISIGVTQHGMSFSEALHLY 230
Query: 241 VRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTA--IVEQLSHYPRALLISAFFMI 298
L++GDGLVSQ+PAL+IS++A +V+R + S N IV QL PRALL++A ++
Sbjct: 231 TVLTIGDGLVSQIPALLISITAGIIVTRVSGDESKNLGTEIVSQLVANPRALLVAAALLL 290
Query: 299 VLSVMPNLPAFPFIMLGGFFACAGFYVPYKNEL-----QRLAKVAQIQEASKQNQHSAQL 353
+ ++P P F+ L A GF + K + L + A A+
Sbjct: 291 LFGLIPGFPLLVFLFLAVLLAAIGFLLRRKKSVGTKEGGDLGAITLSGSADGAASLGAEQ 350
Query: 354 NFITSGVELVLGSLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKG 413
+ V L+L DL + ++R G +P I + D E
Sbjct: 351 DVSAGTVPLILRLGSDLAKALESIDLDQEIDRMRWALFEDLGIPLPGIHIRVDPEGLEDN 410
Query: 414 -YTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFA-IMESFSDDLR 471
Y + + V ++ VL++ GS + + P GM + + +S + L
Sbjct: 411 DYEVLLNEVPVEQGKIPPDHVLLVEGSDELVSTGIPYPTNP--GMEQYYWVTKSHAQKLE 468
Query: 472 RQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYS 531
+ G L V+ HLS V+R N ++ + ++ + L+ +++ +Y L +E I
Sbjct: 469 KLGITYYAPLDVITLHLSHVLRRNANEFIGIQETRYLLDQMERKYSDLVKEV-QRQIPLQ 527
Query: 532 GIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTG- 590
I +L+ L+ E +SIRN+ LILE++ E AP + + E VR + + IC + G
Sbjct: 528 RIAEILQRLVEERISIRNMRLILEALVEWAPKEKDVVMLTEYVRSALKRYICHKFSNGGT 587
Query: 591 ILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTI 650
IL L L + + +AI++ S G + ++PR E + N + G +
Sbjct: 588 ILPALLLDPEIEDVIREAIRQTSAGSYL--ALDPRQSEAILDQIRNILSGTPAPGQDPVL 645
Query: 651 VTLPEIRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTI 691
+T +IR Y+R ++E +FP L VLS+ E+ + + + LGTI
Sbjct: 646 LTSVDIRRYVRKLIESSFPDLPVLSYQELGEEINIQPLGTI 686
>gnl|CDD|33641 COG3851, UhpB, Signal transduction histidine kinase,
glucose-6-phosphate specific [Signal transduction
mechanisms].
Length = 497
Score = 32.6 bits (74), Expect = 0.39
Identities = 29/152 (19%), Positives = 62/152 (40%), Gaps = 32/152 (21%)
Query: 50 IALSILILMVALWIEK--PLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGG 107
+ +L+ ++ L ++ P E S F L + II L+ + YG G
Sbjct: 182 LVWYLLLFIIGLLLQLGLPDELSRFTLFCLALPIIALAWH--------------YGWQGA 227
Query: 108 IIAGFSSLVM--------SGDFVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIP 159
++A + + ++ L++ ++ + + + R+ E+ R
Sbjct: 228 LLASLLNSIALTIARQTWRFSHLVDLLLSLLAQALTGLGLGIAIQRLRELNQRL------ 281
Query: 160 GKQMAIDADLSSGLIEEEEAKRRR--KELEEE 189
K++A + L+ LI EE+ R+ +EL +E
Sbjct: 282 QKELARNRALAEQLISTEESIRKDVARELHDE 313
>gnl|CDD|33917 COG4177, LivM, ABC-type branched-chain amino acid transport system,
permease component [Amino acid transport and
metabolism].
Length = 314
Score = 32.1 bits (73), Expect = 0.48
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 50 IALSILILMVALWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRA-ILSFGHEGYGAAGGI 108
I +L+L+ L + P + + T++LI I+ L LN+ A +LS GH + G
Sbjct: 10 ILALVLLLIAPLLLSLPF-YLNLLTLILIYAILALGLNLVVGYAGLLSLGHAAFFGLGAY 68
Query: 109 IAGFSSLVMSG--DFVIGLVVFMILITINFIVITKGATRIAEV 149
A + G F + L++ ++ + +++ A R+
Sbjct: 69 TAALLLARLLGGLSFWLALLLGGLVAALLGLLLGLPALRLRGD 111
>gnl|CDD|119323 cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of
Escherichia coli LivM and related proteins. LivM is one
of two TMs of the E. coli LIV-1/LS transporter, a
Periplasmic Binding Protein (PBP)-dependent ATP-Binding
Cassette (ABC) transporter involved in the uptake of
branched-chain amino acids (AAs). These types of
transporters generally bind type 1 PBPs. PBP-dependent
ABC transporters consist of a PBP, two TMs, and two
cytoplasmic ABCs, and are mainly involved in importing
solutes from the environment. The solute is captured by
the PBP, which delivers it to a gated translocation
pathway formed by the two TMs. The two ABCs bind and
hydrolyze ATP and drive the transport reaction. E. coli
LivM forms a heterodimer with another TM, LivH, to
generate the transmembrane pore. LivH is not included in
this subgroup. The LIV-1/LS transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) or LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine..
Length = 268
Score = 31.6 bits (73), Expect = 0.65
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 77 LIVTIIRLSLNIATTRA-ILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVV 127
LI I+ L LN+ A LS GH + G A + + F + L+
Sbjct: 2 LIYAILALGLNLLLGYAGQLSLGHAAFFGIGAYTAALLATRLGLPFWLALLA 53
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent
membrane protein 1 or LMP1s mostly from Epstein-Barr
virus. LMP1 of EBV is a 62-65 kDa plasma membrane
protein possessing six membrane spanning regions, a
short cytoplasmic N-terminus and a long cytoplasmic
carboxy tail of 200 amino acids. EBV latent membrane
protein 1 (LMP1) is essential for EBV-mediated
transformation and has been associated with several
cases of malignancies. EBV-like viruses in Cynomolgus
monkeys (Macaca fascicularis) have been associated with
high lymphoma rates in immunosuppressed monkeys.
Length = 382
Score = 30.4 bits (68), Expect = 1.7
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 20 FAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALW 62
++F+ +++II I+F+ +L +G + L I +L++ALW
Sbjct: 56 YSFALILIIIILIIFIFRRDLLCPLGALCLLLLMITLLLIALW 98
>gnl|CDD|35085 COG5526, COG5526, Uncharacterized conserved protein [Function
unknown].
Length = 191
Score = 30.0 bits (67), Expect = 2.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 453 PAFGMPAFAIMESFSDDLRRQGFH 476
P F P +A +S D LR +GF
Sbjct: 95 PPFTGPPYAWEDSALDALRLEGFV 118
>gnl|CDD|37743 KOG2532, KOG2532, KOG2532, Permease of the major facilitator
superfamily [Carbohydrate transport and metabolism].
Length = 466
Score = 29.9 bits (67), Expect = 2.5
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 248 GLVSQVP---ALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMP 304
G +S +P I+ A L R T + + T + + + A A F++VL+
Sbjct: 297 GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTI--AFGGPAVFLLVLAFTS 354
Query: 305 N------LPAFPFIMLGGFFACAGFYV 325
+ + + F +GFY
Sbjct: 355 DEHRLLAVILLTIAIGLSGFNISGFYK 381
>gnl|CDD|32671 COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis
(capsule formation) [Cell envelope biogenesis, outer
membrane].
Length = 372
Score = 29.6 bits (66), Expect = 2.7
Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 15/120 (12%)
Query: 90 TTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVIT--KGATRIA 147
+ A II G V+ + ++ NF+ + IA
Sbjct: 241 PAAGQRALARRLIDAGADIIVGHHPHVLQPIEIYIQGKPILYSLGNFLFDQDYEKIWDIA 300
Query: 148 EVG---------ARFTLDAIPGKQMAIDADLSSGL----IEEEEAKRRRKELEEESAFFG 194
RF +++ + +A+ RR L+ S F
Sbjct: 301 VEREVLGELNYLVRFDPTPGNIYEVSPGPVRERRGRLERLGATDAEARRNLLKRISRSFA 360
>gnl|CDD|37782 KOG2571, KOG2571, KOG2571, Chitin synthase/hyaluronan synthase
(glycosyltransferases) [Cell wall/membrane/envelope
biogenesis].
Length = 862
Score = 29.2 bits (65), Expect = 3.6
Identities = 46/244 (18%), Positives = 74/244 (30%), Gaps = 34/244 (13%)
Query: 14 RNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILM-VALWIEKPLEFSSF 72
R H + +L +F VLL S ++ L + L+I L FS F
Sbjct: 620 RYHTLHVEMLYFAILGPFFIFSMANFVLLLSFRGRSWNSTVHNLFPILLFILLCLTFSLF 679
Query: 73 -------------PTVLLIVTI-IRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMS 118
+ + ++ I SL A A S G +G I S L
Sbjct: 680 MQLLGARPRGNVYMLAMSLYSVLIIYSLLCAGVLAPASLFEGLLGTSGFIAIIISPLEFH 739
Query: 119 GDFVIGLVVFMILITI-----------NFIVITKGATRIAEVGARFTLDAIPGKQMAIDA 167
+ VV+++L+ NF ++ G T+ E A+ A
Sbjct: 740 M--LTPGVVYILLLPSWYFVLPIYAFCNFHDVSWG-TKGREFEAKGLKTGTGEYDHYKVA 796
Query: 168 DLSSGLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCF 227
L + RRK+ S G + + +I + IG
Sbjct: 797 ILELYNFLIRDLCNRRKKSHSFSPEIEEKLGEEPKIAERFWSDVIFAYLK-----PIGSI 851
Query: 228 RYDM 231
+ M
Sbjct: 852 TFLM 855
>gnl|CDD|177135 MTH00063, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 522
Score = 29.1 bits (66), Expect = 3.8
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 24 FCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALW-IEKPLEFSSFPTVLLIVTII 82
+ L++C+L L VG++SS++L+ L W I ++ +F +L+++
Sbjct: 3 LLVSLLLCLLIF----FLFLVGVSSSVSLNFLSFGGYSWLINFDFDYVTFGVLLMLLICF 58
Query: 83 RLSLNIATTRAILSFGHEGYGAAGGIIAGFSS----LVMSGDFVIGLVVFMILITINFIV 138
SL T + + +I F LV++GDF+ L+ + L ++F +
Sbjct: 59 YYSLLY--TFHYFGGSYASFLLNK-LIVLFVLVMGILVLTGDFLSTLIFWEYLGVVSFFL 115
Query: 139 I 139
I
Sbjct: 116 I 116
>gnl|CDD|146422 pfam03772, Competence, Competence protein. Members of this family
are integral membrane proteins with 6 predicted
transmembrane helices. Some members of this family have
been shown to be essential for bacterial competence in
uptake of extracellular DNA. These proteins may
transport DNA across the cell membrane. These proteins
contain a highly conserved motif in the amino terminal
transmembrane region that has two histidines that may
form a metal binding site.
Length = 270
Score = 28.7 bits (65), Expect = 5.4
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 11/124 (8%)
Query: 23 SFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVALWIEKPLEFSSFPTVLLIVTII 82
S + ++ +L P LL G S +L++A ++K L S + L+ +
Sbjct: 103 SLALAALLLLLIDP--LALLSAGFQLSFLAVAGLLLLAPRLQKRLSRLSPRLLALLFL-V 159
Query: 83 RLSLNIATTRAILSFGHEGYGAAGGIIAG------FSSLVMSGDFVIGLVVFMILITINF 136
L+ +AT L H G + ++A S +V+ + L+ +
Sbjct: 160 SLAAQLAT--LPLLLYHFGQFSLVSLLANLLAVPLVSFVVLPLALLALLLSLFPPLAALL 217
Query: 137 IVIT 140
+ +
Sbjct: 218 LWLA 221
>gnl|CDD|146204 pfam03448, MgtE_N, MgtE intracellular N domain. This domain is
found at the N-terminus of eubacterial magnesium
transporters of the MgtE family pfam01769. This domain
is an intracellular domain that has an alpha-helical
structure. The crystal structure of the MgtE transporter
shows two of 5 magnesium ions are in the interface
between the N domain and the CBS domains. In the absence
of magnesium there is a large shift between the N and
CBS domains.
Length = 102
Score = 28.6 bits (65), Expect = 5.9
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 462 IMESFSDDLRRQGFH--PIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPE 515
++E + R P + A VL L E ++ L + L +++ L+ LDP+
Sbjct: 9 LLEELPPEERLALLRLLPPERAAEVLEELDEDVQAELLEALPPEELAELLEELDPD 64
>gnl|CDD|33848 COG4091, COG4091, Predicted homoserine dehydrogenase [Amino acid
transport and metabolism].
Length = 438
Score = 28.4 bits (63), Expect = 6.5
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 130 ILITINFIVITKGATRIAEVGARFTLDAIPGKQ----MAIDADLSSGLIEEEEAKR 181
++I + I + AT + EVGA+ L+AI + M ++AD++ G I +++A
Sbjct: 95 LIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA 150
>gnl|CDD|145898 pfam02990, EMP70, Endomembrane protein 70.
Length = 518
Score = 28.4 bits (64), Expect = 7.2
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 16/57 (28%)
Query: 104 AAGGIIAGFSS---------------LVMSGDFVIGLVVFMILITINFIVITKGATR 145
A G +AG+ S L+++ G +VF+I +NF++ G++
Sbjct: 304 ALTGFVAGYVSARLYKTFKGKKWKRNLILTAFLFPG-IVFVIFFVLNFVLWAYGSSG 359
>gnl|CDD|37746 KOG2535, KOG2535, KOG2535, RNA polymerase II elongator complex,
subunit ELP3/histone acetyltransferase [Chromatin
structure and dynamics, Transcription].
Length = 554
Score = 28.0 bits (62), Expect = 8.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 266 VSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVLSVMPNLPAFPF 311
V+R T++G T A+ E L A F +V +MP+LP
Sbjct: 261 VARDTNRGHTVKAVCESF-----HLAKDAGFKVVAHMMPDLPNVGM 301
>gnl|CDD|177210 MTH00153, COX1, cytochrome c oxidase subunit I; Provisional.
Length = 511
Score = 27.9 bits (63), Expect = 9.5
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 7/24 (29%)
Query: 294 AFFMIVLSVMPNLPAFPFIMLGGF 317
AF MI VMP IM+GGF
Sbjct: 60 AFIMIFFMVMP-------IMIGGF 76
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.324 0.139 0.392
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 8,080,965
Number of extensions: 450751
Number of successful extensions: 2053
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2024
Number of HSP's successfully gapped: 102
Length of query: 692
Length of database: 6,263,737
Length adjustment: 101
Effective length of query: 591
Effective length of database: 4,081,228
Effective search space: 2412005748
Effective search space used: 2412005748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.4 bits)