RPSBLAST alignment of GI: 254780512 and protein with PDBid: 3mix
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis} Length = 382
Score = 265 bits (678), Expect = 2e-71
Identities = 97/375 (25%), Positives = 177/375 (47%), Gaps = 8/375 (2%)
Query: 324 YVPYKNELQRLAKVAQIQEASKQNQHSAQLNFI----TSGVELVLG-SLVSNRLLSSQED 378
Y K+ ++ ++E ++ ++ + + + +E G L+ + D
Sbjct: 9 YTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLADANQGGD 68
Query: 379 LFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILG 438
L R+ IRR+ A++ G ++P +++ +I+L Y +++ G VA EL + L +
Sbjct: 69 LLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYLAMSP 128
Query: 439 SGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQ 498
+ + G E EP+FG+PA I E+ D+ G+ +D +VV TH++E I+ + +
Sbjct: 129 TPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQHAHE 188
Query: 499 LLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIA 558
L+ ++ K LI L Y L EE + +S IQ VL LL E VSIRNL I E++A
Sbjct: 189 LIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLVTIFETLA 248
Query: 559 EVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGEC 617
+ + + + E R +A+QI A +L ++ + +Q+ G
Sbjct: 249 DYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQTEHGN- 307
Query: 618 VDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHM 677
++EP E + Q + ++ P +R Y++ +LER FP L VLS+
Sbjct: 308 -YLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLPVLSYN 366
Query: 678 EIAKGLKVNILGTIS 692
E+ ++V +G +
Sbjct: 367 ELEANVEVQSIGVVD 381