RPSBLAST alignment of GI: 254780512 and protein with PDBid: 3mix

>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis} Length = 382
 Score =  265 bits (678), Expect = 2e-71
 Identities = 97/375 (25%), Positives = 177/375 (47%), Gaps = 8/375 (2%)

Query: 324 YVPYKNELQRLAKVAQIQEASKQNQHSAQLNFI----TSGVELVLG-SLVSNRLLSSQED 378
           Y   K+  ++      ++E ++ ++  +  + +       +E   G  L+     +   D
Sbjct: 9   YTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLADANQGGD 68

Query: 379 LFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILG 438
           L  R+  IRR+ A++ G ++P +++  +I+L    Y +++ G  VA  EL +   L +  
Sbjct: 69  LLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYLAMSP 128

Query: 439 SGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQ 498
           + +     G E  EP+FG+PA  I E+  D+    G+  +D  +VV TH++E I+ +  +
Sbjct: 129 TPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQHAHE 188

Query: 499 LLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIA 558
           L+  ++ K LI  L   Y  L EE   + +S   IQ VL  LL E VSIRNL  I E++A
Sbjct: 189 LIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLVTIFETLA 248

Query: 559 EVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGEC 617
           +    +  +  + E  R  +A+QI    A    +L ++      +      +Q+   G  
Sbjct: 249 DYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQTEHGN- 307

Query: 618 VDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHM 677
              ++EP   E    +      Q   +     ++  P +R Y++ +LER FP L VLS+ 
Sbjct: 308 -YLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLPVLSYN 366

Query: 678 EIAKGLKVNILGTIS 692
           E+   ++V  +G + 
Sbjct: 367 ELEANVEVQSIGVVD 381