RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein
FlhA [Candidatus Liberibacter asiaticus str. psy62]
(692 letters)
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein
transport, type III secretion; 2.30A {Bacillus subtilis}
Length = 382
Score = 265 bits (678), Expect = 2e-71
Identities = 97/375 (25%), Positives = 177/375 (47%), Gaps = 8/375 (2%)
Query: 324 YVPYKNELQRLAKVAQIQEASKQNQHSAQLNFI----TSGVELVLG-SLVSNRLLSSQED 378
Y K+ ++ ++E ++ ++ + + + +E G L+ + D
Sbjct: 9 YTLSKSGKEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLADANQGGD 68
Query: 379 LFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILG 438
L R+ IRR+ A++ G ++P +++ +I+L Y +++ G VA EL + L +
Sbjct: 69 LLDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYLAMSP 128
Query: 439 SGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQ 498
+ + G E EP+FG+PA I E+ D+ G+ +D +VV TH++E I+ + +
Sbjct: 129 TPEDDLIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQHAHE 188
Query: 499 LLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIA 558
L+ ++ K LI L Y L EE + +S IQ VL LL E VSIRNL I E++A
Sbjct: 189 LIGRQETKQLIDHLKESYPVLVEEVTPNPLSVGDIQKVLAKLLKEKVSIRNLVTIFETLA 248
Query: 559 EVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGEC 617
+ + + + E R +A+QI A +L ++ + +Q+ G
Sbjct: 249 DYGKLTTDSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIADGVQQTEHGN- 307
Query: 618 VDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHM 677
++EP E + Q + ++ P +R Y++ +LER FP L VLS+
Sbjct: 308 -YLSLEPDISESIVRSVAKEAEQLSLRQETAILLCSPPVRMYVKQLLERYFPDLPVLSYN 366
Query: 678 EIAKGLKVNILGTIS 692
E+ ++V +G +
Sbjct: 367 ELEANVEVQSIGVVD 381
>3a5i_A Flagellar biosynthesis protein FLHA; four domains, thioredoxin-like
fold, bacterial flagellum BIO bacterial flagellum
protein export; 2.80A {Salmonella typhimurium}
Length = 389
Score = 260 bits (665), Expect = 8e-70
Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 8/316 (2%)
Query: 378 DLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVIL 437
+L R+ IR+KFA GF+ P + + ++ L Y I + G + + G L I
Sbjct: 79 ELLGRIRSIRKKFAQDMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAIN 138
Query: 438 GSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLS 497
T PG++ +PAFG+ A I + + + QGF ++ VV THL+ +I +
Sbjct: 139 PGTAAGTLPGEKTVDPAFGLDAIWIESALKEQAQIQGFTVVEASTVVATHLNHLIGQFSA 198
Query: 498 QLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESI 557
+L ++ + L+ R+ E KL E+ ++ + + VL+ LLAE V IR++ ILE++
Sbjct: 199 ELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTTLHKVLQNLLAEKVPIRDMRTILETL 258
Query: 558 AEVAPHSRKTSHIVEQVRIRMAQQICGDLAP-TGILNILKLGNHWDMIFYQAIQRDSKGE 616
AE AP + VR+ + + I P + ++ L + + QA+Q
Sbjct: 259 AEHAPLQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQALQGGG--- 315
Query: 617 CVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSH 676
+EP + ++ + G P ++ +R + L R+ P L VLS+
Sbjct: 316 ----GLEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 371
Query: 677 MEIAKGLKVNILGTIS 692
+E++ + + TI
Sbjct: 372 LELSDNRHIRMTATIG 387
>2x49_A INVA, invasion protein INVA; protein transport, transport,
pathogenesis; 1.50A {Salmonella enterica subsp} PDB:
2x4a_A* 3lw9_A
Length = 333
Score = 253 bits (646), Expect = 1e-67
Identities = 72/310 (23%), Positives = 144/310 (46%), Gaps = 3/310 (0%)
Query: 382 RVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQ 441
++R +F + YG +PE+ + L + + + V + + V+ S +
Sbjct: 27 LAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDE 86
Query: 442 KPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLS 501
+F + F + + LR G+ + L + L+ + N+++
Sbjct: 87 VVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFG 146
Query: 502 YKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVA 561
++ K+++ +L+ ++ L +E H + I VL+ LL+E VS+RN+ LI+E++A A
Sbjct: 147 IQETKHMLDQLEAKFPDLLKE-VLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWA 205
Query: 562 PHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFN 621
P + ++VE +R MA+ IC A G L + + + + + I++ S +
Sbjct: 206 PREKDVINLVEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGST--FLS 263
Query: 622 VEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYIRMILERNFPSLAVLSHMEIAK 681
++P A + T + + L ++T ++R +I+ ++E FP L VLS EIA
Sbjct: 264 LDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIAD 323
Query: 682 GLKVNILGTI 691
VN++ TI
Sbjct: 324 SKSVNVIKTI 333
>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III
secretion, cytoplasmic FRAG protein transport; 2.40A
{Helicobacter pylori}
Length = 365
Score = 241 bits (616), Expect = 4e-64
Identities = 91/337 (27%), Positives = 160/337 (47%), Gaps = 8/337 (2%)
Query: 360 VELVLG-SLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRV 418
+EL LG L+S + DL R+ IR+K A YGF++P+I++ ++ LP Y I++
Sbjct: 31 LELALGYQLISLADMKQGGDLLERIRGIRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKL 90
Query: 419 YGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPI 478
G + + + L + G KEPAFGM A I ++ QG+ I
Sbjct: 91 KGIVIGEGMVMPDKFLAMNTGFVNREIEGIPTKEPAFGMDALWIDAKNKEEAIIQGYTII 150
Query: 479 DNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLK 538
D V+ TH SE+++ ++ +VK+L+ RL +Y + EE+ I I++VL+
Sbjct: 151 DPSTVIATHTSELVKKYAEDFITKDEVKSLLERLAKDYPTIVEES--KKIPTGAIRSVLQ 208
Query: 539 LLLAEHVSIRNLPLILESIAEVAPHSRK-TSHIVEQVRIRMAQQICGDLAPT-GILNILK 596
LL E + I+++ ILE+I ++AP + + + EQVR R+++ I G L L
Sbjct: 209 ALLHEKIPIKDMLTILETITDIAPLVQNDVNILTEQVRARLSRVITNAFKSEDGRLKFLT 268
Query: 597 LGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGI-PLTIVTLPE 655
+ ++ + + + ++ E + + + KGI P+ ++ P
Sbjct: 269 FSTDSEQFLLNKLRENGTSK--SLLLNVGELQKLIEGVSEEAMKVLQKGIAPVILIVEPN 326
Query: 656 IRSYIRMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692
+R + +E+ + VLSH E+ LGTI
Sbjct: 327 LRKALSNQMEQARIDVVVLSHAELDPNSNFEALGTIH 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 68.8 bits (168), Expect = 4e-12
Identities = 96/613 (15%), Positives = 171/613 (27%), Gaps = 256/613 (41%)
Query: 196 MDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSI----HHAA----DVFVR-LS-V 245
MD S R + ++ G + + + A + F + L
Sbjct: 1 MDAYS--TR-----PLTLSH---------GSLEHVLLVPTASFFIASQLQEQFNKILPEP 44
Query: 246 GDGLVSQ-VPALIISLSAAFL--VSRTTSKGSTNTAIVEQLSHYPRAL--LISAF---FM 297
+G + P L FL VS + + + L ++ F ++
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSK--------VGQFDQVLNLCLTEFENCYL 96
Query: 298 I---VLSVMPNLPAFPFIMLGG--------FFACAGFYVPY-KNELQRLAKVAQIQEASK 345
+ ++ L L A P+ K L +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG------ 150
Query: 346 QNQHSAQLNFITSG-----------VEL------VLGSLV---SNRL--LSSQEDLFLRV 383
+ +AQL I G +L ++G L+ + L L
Sbjct: 151 --EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL---DA 205
Query: 384 SKIRRKFAVQYGFIV------PEIKVTTD------ISLPEKG------Y--TIRVYGTTV 423
K+ + G + P D IS P G Y T ++ G T
Sbjct: 206 EKVFTQ-----GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 424 AISELRVGEVLVIL----GSGQKPTFPGDEVKEPAFGM-PAFAIM-----ESFSDDLRR- 472
GE+ L G Q G+ A AI ESF +R+
Sbjct: 261 -------GELRSYLKGATGHSQ--------------GLVTAVAIAETDSWESFFVSVRKA 299
Query: 473 ------------QGFHPIDNL--AVV---LTH--------LSEVIRNNLSQLLSYKDVKN 507
+ + P +L +++ L + LS I N L+ + V++
Sbjct: 300 ITVLFFIGVRCYEAY-PNTSLPPSILEDSLENNEGVPSPMLS--ISN-----LTQEQVQD 351
Query: 508 LISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLAEHV-SIRNLPLILESI--------A 558
+++ + L + S + L+++ S+ L L L +
Sbjct: 352 YVNKTN---SHLPAG---KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 559 EVAPHS-RKT--------------SHIVEQVRIRMAQQICGDLAPTGIL---NILKL--- 597
+ P S RK SH++ + I DL + +++
Sbjct: 406 RI-PFSERKLKFSNRFLPVASPFHSHLLVPA----SDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 598 ----GNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFS------ENATNS----IRQYID 643
G+ D+ R G ++ R V+ E T I +D
Sbjct: 461 DTFDGS--DL-------RVLSG-----SISERIVDCIIRLPVKWETTTQFKATHI---LD 503
Query: 644 ------KGI-PLT 649
G+ LT
Sbjct: 504 FGPGGASGLGVLT 516
Score = 64.6 bits (157), Expect = 7e-11
Identities = 77/458 (16%), Positives = 137/458 (29%), Gaps = 174/458 (37%)
Query: 310 PFIMLGGFFACAGFYVP---YKNELQRLAK--VAQIQEASKQNQHSAQLNFITSGVELV- 363
P + G VP + +L + + E + + A + T+ ELV
Sbjct: 8 PLTLSHGSLEHV-LLVPTASFFI-ASQLQEQFNKILPEPT---EGFAADDEPTTPAELVG 62
Query: 364 --LGSLVSNRLLSSQEDLFLRVSKI-----RRKF-------AVQYGFIVPEIKVTTDISL 409
LG VS+ + S+ F +V + + A+ ++ D +L
Sbjct: 63 KFLG-YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL-----AAKLLQENDTTL 116
Query: 410 PEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPG-----DEVKEPAFGMPAFAIME 464
+ I+ Y T ++ + V E + AI
Sbjct: 117 VKTKELIKNYITARIMA-------------KRPFDKKSNSALFRAVGEGNAQL--VAI-- 159
Query: 465 SFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLS-YKD-VKNLISRLDPEYQKLAEE 522
F QG N + E L L Y V +LI +L
Sbjct: 160 -FGG----QG-----N---TDDYFEE-----LRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 523 TCSSHISYS-G--IQAVLK----------LLLAEHVSIRNLPLI-LESIAEVAPHSRKTS 568
T + ++ G I L+ LL +S PLI + +A H T+
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-IS---CPLIGVIQLA----HYVVTA 253
Query: 569 HIVE----QVRIRMAQQICGDLAPTGILNILKLGNH---------------WDMIFYQAI 609
++ ++R + TG H W+ F+ ++
Sbjct: 254 KLLGFTPGELRSYLK-------GATG---------HSQGLVTAVAIAETDSWES-FFVSV 296
Query: 610 QRDSKGECVDFNVEPRAVEM-F-----SENATN------SIRQYID-----KGIP---LT 649
+ +A+ + F A SI + D +G+P L+
Sbjct: 297 R--------------KAITVLFFIGVRCYEAYPNTSLPPSILE--DSLENNEGVPSPMLS 340
Query: 650 IVTLPEIRSYIRMILER-NFPSLAVLSHMEIAKGLKVN 686
I L + ++ + + N L +EI+ L VN
Sbjct: 341 ISNLT--QEQVQDYVNKTN-SHLPAGKQVEIS--L-VN 372
Score = 56.1 bits (135), Expect = 3e-08
Identities = 96/507 (18%), Positives = 151/507 (29%), Gaps = 177/507 (34%)
Query: 35 LPIPTVLLDVGLASSIALSILILMVALWIE------KPLEFSSFPTVLLIVTIIRLSLNI 88
LP PT + G A+ + +V ++ +P + F VL L L
Sbjct: 41 LPEPT---E-GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLT- 89
Query: 89 ATTRAILSFGHEGYGAAGGIIAGFSSLVMSGDFVIGLVVFMILITINFIVITKGATRIAE 148
L G++ + A + L+ D + +I I ++ K
Sbjct: 90 EFENCYLE-GNDIHALA-------AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 149 VGA--------RFTLDAIPGKQMAID------ADLSS---GLIEE--EEAKRRRKELEEE 189
A L AI G Q D DL L+ + + + EL
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 190 SAFFGAMDGASK-FVRG----------------DAIASI-----IITAINI----VGGIV 223
+ A K F +G D + SI +I I + V +
Sbjct: 202 T------LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 224 IGCFRYDMSIHHAADVFVRLSVGDGLV--SQ--VPALIISLS---AAFLVSRTTSKGSTN 276
+G ++ L G SQ V A+ I+ + +F VS +
Sbjct: 256 LGF--------TPGELRSYLK---GATGHSQGLVTAVAIAETDSWESFFVS---VR---- 297
Query: 277 TAIVEQL------SH--YPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYK 328
A + L + YP L + I+ + N P ML + +
Sbjct: 298 KA-ITVLFFIGVRCYEAYPNTSLPPS---ILEDSLENNEGVPSPML----SISN------ 343
Query: 329 NELQRLAKVAQIQEASKQ-NQH---SAQL---------NFITSGVELVLGSLVS-NRLL- 373
L + Q+Q+ + N H Q+ N + SG SL N L
Sbjct: 344 --LTQ----EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ---SLYGLNLTLR 394
Query: 374 ----SSQEDLFLRVSKI---RRKFAVQYGFI---VP-----------EIK---VTTDISL 409
S D S+I RK F+ P I V ++S
Sbjct: 395 KAKAPSGLD----QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 410 PEKGYTIRVYGTTVAISELR-VGEVLV 435
K I VY T S+LR + +
Sbjct: 451 NAKDIQIPVYDTFDG-SDLRVLSGSIS 476
Score = 55.7 bits (134), Expect = 3e-08
Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 63/277 (22%)
Query: 375 SQE-----DLFLRVSKIRRK--------FAVQYGFIVPEIKVTTDISLP-----EKGYTI 416
SQE DL+ + SK + F YGF + +I + ++L EKG I
Sbjct: 1626 SQEQGMGMDLY-KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 417 R------VYGTTVAISELRVGEVLVILGSGQKP-TFPGDE--VKEPAFGMPAFAIMESFS 467
R ++ T V +L+ ++ + TF ++ + F PA +ME +
Sbjct: 1685 RENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 468 -DDLRRQGFHPIDNLAVVLTH-LSEVIRNNLSQLLSYKDVKNLISRLDPEY-----QKLA 520
+DL+ +G P D A H L E + L S DV ++ S ++ + ++A
Sbjct: 1744 FEDLKSKGLIPAD--ATFAGHSLGE-----YAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 521 ---EETCSSHISYSGIQAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIR 577
+E S +Y G+ A+ +A S L ++E + ++T +VE V
Sbjct: 1797 VPRDELGRS--NY-GMIAINPGRVAASFSQEALQYVVERVG------KRTGWLVEIVNYN 1847
Query: 578 MAQQ---ICGDLAP----TGILNILKLGNHWDMIFYQ 607
+ Q GDL T +LN +KL D+I Q
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKL-QKIDIIELQ 1883
Score = 33.0 bits (75), Expect = 0.25
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 32/106 (30%)
Query: 34 FLPI--P--TVLLDVGLASSIALSILILMVALWIEKPLEFSSFPT------------VL- 76
FLP+ P + LL AS + L+ + K ++ + T +
Sbjct: 420 FLPVASPFHSHLLVP--ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477
Query: 77 -LIVTIIRLSLN--IATT-RA--ILSFGHEGYGAAGGIIAGFSSLV 116
++ IIRL + T +A IL FG GG +G L
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFG------PGG-ASGLGVLT 516
Score = 31.8 bits (72), Expect = 0.51
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 29/139 (20%)
Query: 413 GYTIRVYGTTVAISEL----RVGEVLVILGSGQKPTFPGDEVKEPAFGMPAF---AIMES 465
G+++ Y +++++ + EV+ G + P DE+ +GM A + S
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 466 FSDDL---------RRQGFHPIDNLAVVLTHLSE----VIRNNLSQLLSYKDVKNLI--S 510
FS + +R G+ L ++ + E V +L L + +V N I
Sbjct: 1821 FSQEALQYVVERVGKRTGW-----LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
Query: 511 RLD-PEYQK-LAEETCSSH 527
++D E QK L+ E H
Sbjct: 1876 KIDIIELQKSLSLEEVEGH 1894
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.0 bits (79), Expect = 0.052
Identities = 6/26 (23%), Positives = 18/26 (69%)
Query: 653 LPEIRSYIRMILERNFPSLAVLSHME 678
L ++++ +++ + + P+LA+ + ME
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 17/46 (36%)
Query: 515 EYQKLAEETCSSHISYSGIQAVLKLLLAEHVSIRNLP-LILESIAE 559
E Q L + +QA LK L A+ + P L +++ E
Sbjct: 18 EKQALKK-----------LQASLK-LYADDSA----PALAIKATME 47
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus HB8} PDB: 2yvx_A
Length = 473
Score = 32.0 bits (72), Expect = 0.48
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 462 IMESFSDDLRRQGFH--PIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPE 515
+ + + R P A VL+HLS + + L ++ ++ L +
Sbjct: 59 LWDELKGEHRYVVLTLLPKAKAAEVLSHLSPEEQAEYLKTLPPWRLREILEELSLD 114
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.8 bits (71), Expect = 0.55
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 166 DADLSSGLIEEEEAKRRRKELEE 188
+ D +S ++E+E ++ +K+LEE
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEE 122
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 31.1 bits (69), Expect = 0.83
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 10/98 (10%)
Query: 556 SIAEVAPHSRKTSHIVEQVRIR----MAQQICGDLAPTGILNILKLGNHWDMIFYQAIQR 611
A A +VE+ + +AQ + + + N + + + +
Sbjct: 40 EAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSERQNTLED-YVRYVTL 98
Query: 612 DSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649
D G V ++ + ++ + G+P+
Sbjct: 99 DMMGLA-----REDLVADYARHVDGTVHLFEKWGLPIW 131
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 30.2 bits (67), Expect = 1.6
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 586 LAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKG 645
A GI + + D + G C + AVE + NA + ++ ID+G
Sbjct: 48 YAQGGIAAVFDETDSID-SHVEDTLIAGAGIC-----DRHAVEFVASNARSCVQWLIDQG 101
Query: 646 IPLTIVTLPEIRSYIRMILE 665
+ P + E
Sbjct: 102 VLFDTHIQPNGEESYHLTRE 121
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside
6-adenyltransferase, PSI-2, structural genomics; 2.65A
{Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Length = 294
Score = 29.8 bits (67), Expect = 2.3
Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 479 DNLAVVLTHLSEVIRNNLSQLLSY-------------KDVKNLISRLDPEYQKLAEETCS 525
+ + + HL+E++R NL +++++ K+ K + L + + T S
Sbjct: 175 NEILFAIDHLNEIVRPNLLRMMAWHIASQKGYSFSMGKNYKFMKRYLSNKEWEELMSTYS 234
Query: 526 SHISYSGIQAVLKL 539
+ +++
Sbjct: 235 VNGYQEMWKSLFTC 248
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, complex II, quinol, quinone;
HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A*
3cir_A*
Length = 602
Score = 29.0 bits (64), Expect = 3.3
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 586 LAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKG 645
A G + + + ++ + C E V+ F + + Q G
Sbjct: 48 AAEGGSAAVAQDHDSFEY-HFHDTVAGGDWLC-----EQDVVDYFVHHCPTEMTQLELWG 101
Query: 646 IPLT 649
P +
Sbjct: 102 CPWS 105
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 29.2 bits (64), Expect = 3.6
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 577 RMAQQICGDLAPTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATN 636
AQ G + + + + G++ D + + + S C + + MF A
Sbjct: 45 AAAQ---GGMQASLGNSKMSDGDNED-LHFMDTVKGSDWGC-----DQKVARMFVNTAPK 95
Query: 637 SIRQYIDKGIPLT 649
+IR+ G+P T
Sbjct: 96 AIRELAAWGVPWT 108
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 29.0 bits (64), Expect = 3.8
Identities = 49/391 (12%), Positives = 109/391 (27%), Gaps = 43/391 (10%)
Query: 172 GLIEEEEAKRRRKELEEESAFFGAMDGASKFVRGD-----AIASIIITAINIVGGIV-IG 225
G++ + E ++ LE+ S G + D A + I + G + G
Sbjct: 55 GILTKTELEKILSGLEKISE--EWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTG 112
Query: 226 CFRYDMSIHHAADVFVRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSH 285
R D + +F++ S+ + + + A + G T+ + +
Sbjct: 113 RSRNDQ-VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRW 171
Query: 286 YPRALLISAFFMIVLSVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKVAQIQEASK 345
L + + + ++ G A AG + E+ R +
Sbjct: 172 SQFLLSHAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNS 231
Query: 346 QNQHSAQLNFITSGVELVLGSLVSNRLLSSQEDLFL----RVSKIRRKFAVQYGFIVPEI 401
+ S + + +L+ L EDL + + A G +
Sbjct: 232 MDAISERDFVVEFLSFA---TLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQ 288
Query: 402 KVTTDISLPEKGYTIRVYGTTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFA 461
K D + RV+G +I + K F
Sbjct: 289 KKNPDSLELIRSKAGRVFGRLASILMV------------LKGLPSTYNKDLQEDKEAVFD 336
Query: 462 IMESFSDDLRRQGFHPIDNLAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAE 521
++++ + L+ + L+ L+ V+ +
Sbjct: 337 VVDTLTAVLQVATGVISTLQISKENMEKALTPEMLATDLALYLVRKGVPF---------- 386
Query: 522 ETCSSHISYSGIQAVLKLLLAEHVSIRNLPL 552
+++ + L + ++I L L
Sbjct: 387 -----RQAHTASGKAVHLAETKGITINKLSL 412
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur protein,
oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 1zoy_A* 1zp0_A*
Length = 621
Score = 28.6 bits (63), Expect = 4.8
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 619 DFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649
D+ + A+ +E A ++ + + G+P +
Sbjct: 88 DWLGDQDAIHYMTEQAPAAVIELENYGMPFS 118
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 28.4 bits (62), Expect = 5.2
Identities = 5/45 (11%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 605 FYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649
+ + ++ D G + + +S+ + + G+P+
Sbjct: 87 YVRMVRTDLMGLV-----REDLIYDLGRHVDDSVHLFEEWGLPVW 126
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane,
tricarboxylic acid cycle; HET: FAD HEM CBE; 2.40A
{Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A*
2wdv_A*
Length = 588
Score = 28.2 bits (62), Expect = 6.1
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 619 DFNVEPRAVEMFSENATNSIRQYIDKGIPLT 649
D+ + A+E + +I + G+P +
Sbjct: 77 DYIGDQDAIEYMCKTGPEAILELEHMGLPFS 107
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor,
HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET:
UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A*
3hqr_A* 2g19_A*
Length = 247
Score = 28.3 bits (62), Expect = 6.3
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 457 MPAF-AIMESFSDDLRRQGFHPIDNLAVVLTH-LSEVIRNNLSQL 499
+PA +E + + G +D+ L + I + + L
Sbjct: 9 LPALKLALEYIVPCMNKHGICVVDDF---LGKETGQQIGDEVRAL 50
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endoplasmic
reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB:
2vrg_A
Length = 143
Score = 28.1 bits (62), Expect = 6.4
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 165 IDADLSSGLIEEEEAKRRRKELEEESAFFGAMD-GASKFVRGDAIASIIITAINIVGGIV 223
I L G+I + EA+ +EL+ +F D + + G +++ I G
Sbjct: 49 IMEHLE-GVINKPEAEMSPQELQLH--YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQ 105
Query: 224 IGCFRYDMSIHHAADVFVRLSV-GDGLVS 251
D I+ V DG +
Sbjct: 106 APLMSEDELINIIDGVLRDDDKNNDGYID 134
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger,
propeller cluster, helical repeats, cullin repeats,
protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP:
a.4.5.34 a.118.17.1 e.40.1.1
Length = 759
Score = 27.7 bits (61), Expect = 8.6
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 24/165 (14%)
Query: 482 AVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPE--YQKLAEETCSSHISYSGIQAVLKL 539
AV S IR NL +L Y+ V+NL S Y++L + C H+ +L
Sbjct: 69 AVRAVQSSTSIRYNLEEL--YQAVENLCSHKVSPMLYKQL-RQACEDHVQ----AQILPF 121
Query: 540 LLAEHVSIRNLPLILESIAEVAPHSRKT------------SHIVEQVRIRMAQQICGDLA 587
S+ L I + H R+ +++++ + + +L
Sbjct: 122 REDSLDSVLFLKKINTCWQD---HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELF 178
Query: 588 PTGILNILKLGNHWDMIFYQAIQRDSKGECVDFNVEPRAVEMFSE 632
T I++ + + I+R+ GE VD ++ + M S+
Sbjct: 179 RTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSD 223
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.139 0.392
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,677,483
Number of extensions: 268119
Number of successful extensions: 1078
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1060
Number of HSP's successfully gapped: 38
Length of query: 692
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 593
Effective length of database: 3,293,074
Effective search space: 1952792882
Effective search space used: 1952792882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.3 bits)