RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62] (692 letters) >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 Score = 32.3 bits (72), Expect = 0.12 Identities = 22/183 (12%), Positives = 56/183 (30%), Gaps = 9/183 (4%) Query: 428 LRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDD-----LRRQGFHPIDNLA 482 L ++ +G+ FP + + D L+ +D Sbjct: 19 LESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLD--F 76 Query: 483 VVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLA 542 +++TH N+ +LLS V + + + + E + G VL+ Sbjct: 77 ILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDN--LYGYDKVLQTATE 134 Query: 543 EHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWD 602 VS+ ++ + + + + + D +++++K+ Sbjct: 135 TGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKI 194 Query: 603 MIF 605 + Sbjct: 195 YLG 197 >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Score = 28.4 bits (63), Expect = 1.9 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%) Query: 632 ENATNSIRQYIDKGIPLTIVTLP----EIRSYIRMILERNFPSLAVLS 675 ++ + + ID G+ ++ LP + ++ L + PS + Sbjct: 2 DSIKSQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLINSIPSQFMRY 49 >d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Klebsiella pneumoniae [TaxId: 573]} Length = 519 Score = 27.7 bits (61), Expect = 2.8 Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 12/132 (9%) Query: 476 HPIDNLAVVLTHLSE--VIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGI 533 H + +A V ++E + + + ++N + PE ++ TC + + + Sbjct: 104 HFKEPIACVSDSMTEDAAVFGGNNNM--NLGLQNASALYKPEIIAVST-TCMAEVIGDDL 160 Query: 534 QAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAP----T 589 QA + + ++ + A + + A+ D Sbjct: 161 QAFIANAKKDGFVDSSIAVPH---AHTPSFIGSHVTGWDNMFEGFAKTFTADYQGQPGKL 217 Query: 590 GILNILKLGNHW 601 LN++ + Sbjct: 218 PKLNLVTGFETY 229 >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Length = 205 Score = 27.1 bits (59), Expect = 4.7 Identities = 7/32 (21%), Positives = 13/32 (40%) Query: 491 VIRNNLSQLLSYKDVKNLISRLDPEYQKLAEE 522 VI N+ + ++ + L Y + AE Sbjct: 172 VINNDAELAQNLPHLQQKVLELHQFYLQQAEN 203 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.139 0.392 Gapped Lambda K H 0.267 0.0621 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 2,452,979 Number of extensions: 115800 Number of successful extensions: 389 Number of sequences better than 10.0: 1 Number of HSP's gapped: 389 Number of HSP's successfully gapped: 13 Length of query: 692 Length of database: 2,407,596 Length adjustment: 92 Effective length of query: 600 Effective length of database: 1,144,436 Effective search space: 686661600 Effective search space used: 686661600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 56 (25.6 bits)