RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein
FlhA [Candidatus Liberibacter asiaticus str. psy62]
         (692 letters)



>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
           esterase Pce (LytD), N-terminal domain {Streptococcus
           pneumoniae [TaxId: 1313]}
          Length = 305

 Score = 32.3 bits (72), Expect = 0.12
 Identities = 22/183 (12%), Positives = 56/183 (30%), Gaps = 9/183 (4%)

Query: 428 LRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDD-----LRRQGFHPIDNLA 482
           L       ++ +G+   FP        +        +    D     L+      +D   
Sbjct: 19  LESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLD--F 76

Query: 483 VVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLLLA 542
           +++TH       N+ +LLS   V  +  +   + +    E    +    G   VL+    
Sbjct: 77  ILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLWDN--LYGYDKVLQTATE 134

Query: 543 EHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNHWD 602
             VS+       ++  +      +  +   +       +   D     +++++K+     
Sbjct: 135 TGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKI 194

Query: 603 MIF 605
            + 
Sbjct: 195 YLG 197


>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 316

 Score = 28.4 bits (63), Expect = 1.9
 Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 632 ENATNSIRQYIDKGIPLTIVTLP----EIRSYIRMILERNFPSLAVLS 675
           ++  + +   ID G+   ++ LP     +   ++  L  + PS  +  
Sbjct: 2   DSIKSQVDNAIDTGVDGIMLVLPEYNTPLYYKLKSYLINSIPSQFMRY 49


>d1qh8b_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Klebsiella pneumoniae [TaxId: 573]}
          Length = 519

 Score = 27.7 bits (61), Expect = 2.8
 Identities = 16/132 (12%), Positives = 42/132 (31%), Gaps = 12/132 (9%)

Query: 476 HPIDNLAVVLTHLSE--VIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGI 533
           H  + +A V   ++E   +    + +     ++N  +   PE   ++  TC + +    +
Sbjct: 104 HFKEPIACVSDSMTEDAAVFGGNNNM--NLGLQNASALYKPEIIAVST-TCMAEVIGDDL 160

Query: 534 QAVLKLLLAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAP----T 589
           QA +     +     ++ +     A             + +    A+    D        
Sbjct: 161 QAFIANAKKDGFVDSSIAVPH---AHTPSFIGSHVTGWDNMFEGFAKTFTADYQGQPGKL 217

Query: 590 GILNILKLGNHW 601
             LN++     +
Sbjct: 218 PKLNLVTGFETY 229


>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae
           [TaxId: 727]}
          Length = 205

 Score = 27.1 bits (59), Expect = 4.7
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 491 VIRNNLSQLLSYKDVKNLISRLDPEYQKLAEE 522
           VI N+     +   ++  +  L   Y + AE 
Sbjct: 172 VINNDAELAQNLPHLQQKVLELHQFYLQQAEN 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,452,979
Number of extensions: 115800
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 13
Length of query: 692
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 600
Effective length of database: 1,144,436
Effective search space: 686661600
Effective search space used: 686661600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.6 bits)