BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62] (692 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780512|ref|YP_003064925.1| flagellar biosynthesis protein FlhA [Candidatus Liberibacter asiaticus str. psy62] Length = 692 Score = 1399 bits (3621), Expect = 0.0, Method: Compositional matrix adjust. Identities = 692/692 (100%), Positives = 692/692 (100%) Query: 1 MIQSLIGISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVA 60 MIQSLIGISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVA Sbjct: 1 MIQSLIGISDSNDRNHLHDFAFSFCIVLIICILFLPIPTVLLDVGLASSIALSILILMVA 60 Query: 61 LWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGD 120 LWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGD Sbjct: 61 LWIEKPLEFSSFPTVLLIVTIIRLSLNIATTRAILSFGHEGYGAAGGIIAGFSSLVMSGD 120 Query: 121 FVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAK 180 FVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAK Sbjct: 121 FVIGLVVFMILITINFIVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSGLIEEEEAK 180 Query: 181 RRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVF 240 RRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVF Sbjct: 181 RRRKELEEESAFFGAMDGASKFVRGDAIASIIITAINIVGGIVIGCFRYDMSIHHAADVF 240 Query: 241 VRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVL 300 VRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVL Sbjct: 241 VRLSVGDGLVSQVPALIISLSAAFLVSRTTSKGSTNTAIVEQLSHYPRALLISAFFMIVL 300 Query: 301 SVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKVAQIQEASKQNQHSAQLNFITSGV 360 SVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKVAQIQEASKQNQHSAQLNFITSGV Sbjct: 301 SVMPNLPAFPFIMLGGFFACAGFYVPYKNELQRLAKVAQIQEASKQNQHSAQLNFITSGV 360 Query: 361 ELVLGSLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYG 420 ELVLGSLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYG Sbjct: 361 ELVLGSLVSNRLLSSQEDLFLRVSKIRRKFAVQYGFIVPEIKVTTDISLPEKGYTIRVYG 420 Query: 421 TTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDN 480 TTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDN Sbjct: 421 TTVAISELRVGEVLVILGSGQKPTFPGDEVKEPAFGMPAFAIMESFSDDLRRQGFHPIDN 480 Query: 481 LAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLL 540 LAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLL Sbjct: 481 LAVVLTHLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSHISYSGIQAVLKLL 540 Query: 541 LAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNH 600 LAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNH Sbjct: 541 LAEHVSIRNLPLILESIAEVAPHSRKTSHIVEQVRIRMAQQICGDLAPTGILNILKLGNH 600 Query: 601 WDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYI 660 WDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYI Sbjct: 601 WDMIFYQAIQRDSKGECVDFNVEPRAVEMFSENATNSIRQYIDKGIPLTIVTLPEIRSYI 660 Query: 661 RMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 RMILERNFPSLAVLSHMEIAKGLKVNILGTIS Sbjct: 661 RMILERNFPSLAVLSHMEIAKGLKVNILGTIS 692 >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 24.6 bits (52), Expect = 5.8, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 479 DNLAVVL-THLSEVIRNNLSQLLSYKDVKNLISRLDPEYQKLAEETCSSH 527 +NL VV T V RN LS + + +LD + L+ ETC+ Sbjct: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.324 0.139 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 406,296 Number of Sequences: 1233 Number of extensions: 16347 Number of successful extensions: 78 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 75 Number of HSP's gapped (non-prelim): 8 length of query: 692 length of database: 328,796 effective HSP length: 80 effective length of query: 612 effective length of database: 230,156 effective search space: 140855472 effective search space used: 140855472 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 42 (20.8 bits)