Query gi|254780513|ref|YP_003064926.1| hypothetical protein CLIBASIA_02000 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 66 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 16:49:01 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780513.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2gb7_A R.ECL18KI; ECL18KI-DNA 33.9 35 0.001 16.2 2.8 31 6-36 3-33 (137) 2 >3hhs_B Propo-P1, phenoloxidas 30.6 29 0.00085 16.7 1.9 21 33-53 41-61 (156) 3 >1lla_A Hemocyanin (subunit ty 27.4 38 0.0011 16.0 2.1 23 31-53 42-64 (160) 4 >3ixv_A Hemocyanin AA6 chain; 23.0 47 0.0014 15.6 1.8 21 33-53 41-61 (157) 5 >1hc1_A Arthropodan hemocyanin 21.0 51 0.0015 15.4 1.7 22 32-53 45-66 (161) 6 >2p5v_A Transcriptional regula 11.5 1.2E+02 0.0037 13.3 2.4 41 1-41 5-51 (60) 7 >3gwj_A Arylphorin; mono-gluco 11.4 1.1E+02 0.0033 13.6 1.4 21 33-53 47-67 (165) 8 >3iol_B Glucagon; receptor-lig 9.2 1.3E+02 0.0038 13.3 1.1 17 4-20 14-30 (31) 9 >1ooh_A Odorant binding protei 8.5 1.6E+02 0.0048 12.7 1.4 12 7-18 41-52 (126) 10 >1t7s_A BAG-1 cochaperone; str 8.0 1.7E+02 0.005 12.6 3.0 40 1-46 32-71 (92) No 1 >>2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction endonuclease, nucleotide flipping, base extrusion, hydrolase/DNA complex; HET: DNA; 1.70A {Enterobacter cloacae} PDB: 2fqz_A* (A:1-137) Probab=33.85 E-value=35 Score=16.25 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.2 Q ss_pred HCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 3176888999852110126702778999999 Q gi|254780513|r 6 ELNTKEFKCFLKNSRKKHITPSKDVVAKSIK 36 (66) Q Consensus 6 elntkefkcflknsrkkhitpskdvvaksik 36 (66) .+...+||-..|.-|++|+..+-|.|-++.- T Consensus 3 ~~~~defk~~Ik~~R~~~~~tpf~ivy~~f~ 33 (137) T 2gb7_A 3 RLSPGEFKTLISKERKSHFITPFALVYKTFC 33 (137) T ss_dssp CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 7675217888778888627978899999998 No 2 >>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, copper, melanin biosynthesis, metal-binding, monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} (B:223-263,B:309-423) Probab=30.61 E-value=29 Score=16.67 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.3 Q ss_pred HHHHHHHHHHHHHCCCCEEEE Q ss_conf 999989999972003000376 Q gi|254780513|r 33 KSIKKYEDRIRSSIDKKTFLT 53 (66) Q Consensus 33 ksikkyedrirssidkktflt 53 (66) -.++.||+|||..||+--+.+ T Consensus 41 ~~~e~ye~Ri~dAId~G~v~~ 61 (156) T 3hhs_B 41 FKLFTWRDQFLEAIQKMAIKM 61 (156) T ss_dssp THHHHHHHHHHHHHHHTEEEC T ss_pred CHHHHHHHHHHHHHHCCEEEC T ss_conf 299999999999998090892 No 3 >>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus polyphemus} (A:189-225,A:261-383) Probab=27.35 E-value=38 Score=16.02 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=18.6 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 99999989999972003000376 Q gi|254780513|r 31 VAKSIKKYEDRIRSSIDKKTFLT 53 (66) Q Consensus 31 vaksikkyedrirssidkktflt 53 (66) --..++.||+||+..||+.-+.+ T Consensus 42 ~i~~i~~yE~RI~dAId~Gyi~~ 64 (160) T 1lla_A 42 EISEMVRMRERILDSIHLGYVIS 64 (160) T ss_dssp CHHHHHHHHHHHHHHHHHTEEEC T ss_pred CHHHHHHHHHHHHHHHHCCCEEC T ss_conf 19999999999999998297787 No 4 >>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY), catecholoxidase (CO), enzyme, SDS, cryo-EM, single particle analysis; 6.80A {Androctonus australis} PDB: 3ixw_A (A:186-221,A:260-380) Probab=23.04 E-value=47 Score=15.58 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHHCCCCEEEE Q ss_conf 999989999972003000376 Q gi|254780513|r 33 KSIKKYEDRIRSSIDKKTFLT 53 (66) Q Consensus 33 ksikkyedrirssidkktflt 53 (66) .-++.||.||+..||+.-+.+ T Consensus 41 ~~~~~~e~RI~dAId~G~~~~ 61 (157) T 3ixv_A 41 QDMVRWRERILDAINMHYIVD 61 (157) T ss_dssp HHHHHHHHHHHHHHHTTEEEC T ss_pred HHHHHHHHHHHHHHHCCCEEC T ss_conf 999999999999997197787 No 5 >>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} (A:209-244,A:278-402) Probab=20.96 E-value=51 Score=15.36 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHHCCCCEEEE Q ss_conf 9999989999972003000376 Q gi|254780513|r 32 AKSIKKYEDRIRSSIDKKTFLT 53 (66) Q Consensus 32 aksikkyedrirssidkktflt 53 (66) -.-++.||+||+..||+.-+.+ T Consensus 45 i~~ie~~E~RI~dAId~G~v~~ 66 (161) T 1hc1_A 45 VHDLEITESRIHEAIDHGYITD 66 (161) T ss_dssp HHHHHHHHHHHHHHHHHSEEEC T ss_pred EEEEEECHHHHHHHHCCCEEEC T ss_conf 3100200777776640570546 No 6 >>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:1-60) Probab=11.46 E-value=1.2e+02 Score=13.35 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=29.0 Q ss_pred CCHHHHCCHHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHH Q ss_conf 9514431768889998521101------2670277899999989999 Q gi|254780513|r 1 MDKLDELNTKEFKCFLKNSRKK------HITPSKDVVAKSIKKYEDR 41 (66) Q Consensus 1 mdkldelntkefkcflknsrkk------hitpskdvvaksikkyedr 41 (66) |.++|++..+-.+...+|+|-. .+--|...|..-|++.|+. T Consensus 5 ~~~lD~~D~~IL~~Lq~n~r~s~~elA~~lgis~~tv~~ri~kL~~~ 51 (60) T 2p5v_A 5 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (60) T ss_dssp CCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 89708999999999998369999999999897988999999999846 No 7 >>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosylation, glycoprotein, secreted, storage protein, oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi} (A:231-268,A:301-427) Probab=11.37 E-value=1.1e+02 Score=13.61 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHCCCCEEEE Q ss_conf 999989999972003000376 Q gi|254780513|r 33 KSIKKYEDRIRSSIDKKTFLT 53 (66) Q Consensus 33 ksikkyedrirssidkktflt 53 (66) .-++.||.||+..||.--+.. T Consensus 47 ~~i~~~E~RI~daId~Gyi~~ 67 (165) T 3gwj_A 47 RFLDAYENYFVQALQKGVFEG 67 (165) T ss_dssp HHHHHHHHHHHHHHHHTEECC T ss_pred HHHHHHHHHHHHHHHHCCCCC T ss_conf 999999999999998275457 No 8 >>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G- protein coupled receptor, glycoprotein, membrane, polymorphism, receptor; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A (B:) Probab=9.24 E-value=1.3e+02 Score=13.25 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=13.2 Q ss_pred HHHCCHHHHHHHHHHCC Q ss_conf 44317688899985211 Q gi|254780513|r 4 LDELNTKEFKCFLKNSR 20 (66) Q Consensus 4 ldelntkefkcflknsr 20 (66) |++-..++|--.|+|++ T Consensus 14 Le~~aakdFv~WL~n~k 30 (31) T 3iol_B 14 LEGQAAKEFIAWLVKGR 30 (31) T ss_dssp HHHHHHHHHHHHHHCC- T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 99999999999998068 No 9 >>1ooh_A Odorant binding protein LUSH; alcohol, transport protein; 1.25A {Drosophila melanogaster} (A:) Probab=8.47 E-value=1.6e+02 Score=12.74 Aligned_cols=12 Identities=17% Similarity=0.550 Sum_probs=7.5 Q ss_pred CCHHHHHHHHHH Q ss_conf 176888999852 Q gi|254780513|r 7 LNTKEFKCFLKN 18 (66) Q Consensus 7 lntkefkcflkn 18 (66) .++.+.|||+.= T Consensus 41 ~~~~~~kC~~~C 52 (126) T 1ooh_A 41 PPSQDLMCYTKC 52 (126) T ss_dssp CCCHHHHHHHHH T ss_pred CCCCCCCCHHHH T ss_conf 988031819999 No 10 >>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} (A:1-92) Probab=8.00 E-value=1.7e+02 Score=12.62 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=0.0 Q ss_pred CCHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 9514431768889998521101267027789999998999997200 Q gi|254780513|r 1 MDKLDELNTKEFKCFLKNSRKKHITPSKDVVAKSIKKYEDRIRSSI 46 (66) Q Consensus 1 mdkldelntkefkcflknsrkkhitpskdvvaksikkyedrirssi 46 (66) +.|++++|.+|..-.-|+--. ++..+.++++.+-|+..++ T Consensus 32 ~~k~~~~n~~El~gieKGFL~------kel~~eal~kl~Krik~~~ 71 (92) T 1t7s_A 32 LQKAYDLNLRDVADLERGFLE------KPKQVEXGKKLEKKVKYFN 71 (92) T ss_dssp HHHHHHHHHHHHHHHHHCCSC------HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH T ss_conf 999986068888678851121------1988889998999999999 Done!