Query         gi|254780513|ref|YP_003064926.1| hypothetical protein CLIBASIA_02000 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 66
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 16:49:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780513.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2gb7_A R.ECL18KI; ECL18KI-DNA  33.9      35   0.001   16.2   2.8   31    6-36      3-33  (137)
  2 >3hhs_B Propo-P1, phenoloxidas  30.6      29 0.00085   16.7   1.9   21   33-53     41-61  (156)
  3 >1lla_A Hemocyanin (subunit ty  27.4      38  0.0011   16.0   2.1   23   31-53     42-64  (160)
  4 >3ixv_A Hemocyanin AA6 chain;   23.0      47  0.0014   15.6   1.8   21   33-53     41-61  (157)
  5 >1hc1_A Arthropodan hemocyanin  21.0      51  0.0015   15.4   1.7   22   32-53     45-66  (161)
  6 >2p5v_A Transcriptional regula  11.5 1.2E+02  0.0037   13.3   2.4   41    1-41      5-51  (60)
  7 >3gwj_A Arylphorin; mono-gluco  11.4 1.1E+02  0.0033   13.6   1.4   21   33-53     47-67  (165)
  8 >3iol_B Glucagon; receptor-lig   9.2 1.3E+02  0.0038   13.3   1.1   17    4-20     14-30  (31)
  9 >1ooh_A Odorant binding protei   8.5 1.6E+02  0.0048   12.7   1.4   12    7-18     41-52  (126)
 10 >1t7s_A BAG-1 cochaperone; str   8.0 1.7E+02   0.005   12.6   3.0   40    1-46     32-71  (92)

No 1  
>>2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction endonuclease, nucleotide flipping, base extrusion, hydrolase/DNA complex; HET: DNA; 1.70A {Enterobacter cloacae} PDB: 2fqz_A* (A:1-137)
Probab=33.85  E-value=35  Score=16.25  Aligned_cols=31  Identities=29%  Similarity=0.439  Sum_probs=27.2

Q ss_pred             HCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             3176888999852110126702778999999
Q gi|254780513|r    6 ELNTKEFKCFLKNSRKKHITPSKDVVAKSIK   36 (66)
Q Consensus         6 elntkefkcflknsrkkhitpskdvvaksik   36 (66)
                      .+...+||-..|.-|++|+..+-|.|-++.-
T Consensus         3 ~~~~defk~~Ik~~R~~~~~tpf~ivy~~f~   33 (137)
T 2gb7_A            3 RLSPGEFKTLISKERKSHFITPFALVYKTFC   33 (137)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             7675217888778888627978899999998


No 2  
>>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, copper, melanin biosynthesis, metal-binding, monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} (B:223-263,B:309-423)
Probab=30.61  E-value=29  Score=16.67  Aligned_cols=21  Identities=14%  Similarity=0.205  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             999989999972003000376
Q gi|254780513|r   33 KSIKKYEDRIRSSIDKKTFLT   53 (66)
Q Consensus        33 ksikkyedrirssidkktflt   53 (66)
                      -.++.||+|||..||+--+.+
T Consensus        41 ~~~e~ye~Ri~dAId~G~v~~   61 (156)
T 3hhs_B           41 FKLFTWRDQFLEAIQKMAIKM   61 (156)
T ss_dssp             THHHHHHHHHHHHHHHTEEEC
T ss_pred             CHHHHHHHHHHHHHHCCEEEC
T ss_conf             299999999999998090892


No 3  
>>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus polyphemus} (A:189-225,A:261-383)
Probab=27.35  E-value=38  Score=16.02  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             99999989999972003000376
Q gi|254780513|r   31 VAKSIKKYEDRIRSSIDKKTFLT   53 (66)
Q Consensus        31 vaksikkyedrirssidkktflt   53 (66)
                      --..++.||+||+..||+.-+.+
T Consensus        42 ~i~~i~~yE~RI~dAId~Gyi~~   64 (160)
T 1lla_A           42 EISEMVRMRERILDSIHLGYVIS   64 (160)
T ss_dssp             CHHHHHHHHHHHHHHHHHTEEEC
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEC
T ss_conf             19999999999999998297787


No 4  
>>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY), catecholoxidase (CO), enzyme, SDS, cryo-EM, single particle analysis; 6.80A {Androctonus australis} PDB: 3ixw_A (A:186-221,A:260-380)
Probab=23.04  E-value=47  Score=15.58  Aligned_cols=21  Identities=14%  Similarity=0.431  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             999989999972003000376
Q gi|254780513|r   33 KSIKKYEDRIRSSIDKKTFLT   53 (66)
Q Consensus        33 ksikkyedrirssidkktflt   53 (66)
                      .-++.||.||+..||+.-+.+
T Consensus        41 ~~~~~~e~RI~dAId~G~~~~   61 (157)
T 3ixv_A           41 QDMVRWRERILDAINMHYIVD   61 (157)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEC
T ss_pred             HHHHHHHHHHHHHHHCCCEEC
T ss_conf             999999999999997197787


No 5  
>>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} (A:209-244,A:278-402)
Probab=20.96  E-value=51  Score=15.36  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9999989999972003000376
Q gi|254780513|r   32 AKSIKKYEDRIRSSIDKKTFLT   53 (66)
Q Consensus        32 aksikkyedrirssidkktflt   53 (66)
                      -.-++.||+||+..||+.-+.+
T Consensus        45 i~~ie~~E~RI~dAId~G~v~~   66 (161)
T 1hc1_A           45 VHDLEITESRIHEAIDHGYITD   66 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHSEEEC
T ss_pred             EEEEEECHHHHHHHHCCCEEEC
T ss_conf             3100200777776640570546


No 6  
>>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:1-60)
Probab=11.46  E-value=1.2e+02  Score=13.35  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=29.0

Q ss_pred             CCHHHHCCHHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHH
Q ss_conf             9514431768889998521101------2670277899999989999
Q gi|254780513|r    1 MDKLDELNTKEFKCFLKNSRKK------HITPSKDVVAKSIKKYEDR   41 (66)
Q Consensus         1 mdkldelntkefkcflknsrkk------hitpskdvvaksikkyedr   41 (66)
                      |.++|++..+-.+...+|+|-.      .+--|...|..-|++.|+.
T Consensus         5 ~~~lD~~D~~IL~~Lq~n~r~s~~elA~~lgis~~tv~~ri~kL~~~   51 (60)
T 2p5v_A            5 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDA   51 (60)
T ss_dssp             CCCCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf             89708999999999998369999999999897988999999999846


No 7  
>>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosylation, glycoprotein, secreted, storage protein, oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi} (A:231-268,A:301-427)
Probab=11.37  E-value=1.1e+02  Score=13.61  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEEE
Q ss_conf             999989999972003000376
Q gi|254780513|r   33 KSIKKYEDRIRSSIDKKTFLT   53 (66)
Q Consensus        33 ksikkyedrirssidkktflt   53 (66)
                      .-++.||.||+..||.--+..
T Consensus        47 ~~i~~~E~RI~daId~Gyi~~   67 (165)
T 3gwj_A           47 RFLDAYENYFVQALQKGVFEG   67 (165)
T ss_dssp             HHHHHHHHHHHHHHHHTEECC
T ss_pred             HHHHHHHHHHHHHHHHCCCCC
T ss_conf             999999999999998275457


No 8  
>>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G- protein coupled receptor, glycoprotein, membrane, polymorphism, receptor; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A (B:)
Probab=9.24  E-value=1.3e+02  Score=13.25  Aligned_cols=17  Identities=35%  Similarity=0.561  Sum_probs=13.2

Q ss_pred             HHHCCHHHHHHHHHHCC
Q ss_conf             44317688899985211
Q gi|254780513|r    4 LDELNTKEFKCFLKNSR   20 (66)
Q Consensus         4 ldelntkefkcflknsr   20 (66)
                      |++-..++|--.|+|++
T Consensus        14 Le~~aakdFv~WL~n~k   30 (31)
T 3iol_B           14 LEGQAAKEFIAWLVKGR   30 (31)
T ss_dssp             HHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHHHCCC
T ss_conf             99999999999998068


No 9  
>>1ooh_A Odorant binding protein LUSH; alcohol, transport protein; 1.25A {Drosophila melanogaster} (A:)
Probab=8.47  E-value=1.6e+02  Score=12.74  Aligned_cols=12  Identities=17%  Similarity=0.550  Sum_probs=7.5

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             176888999852
Q gi|254780513|r    7 LNTKEFKCFLKN   18 (66)
Q Consensus         7 lntkefkcflkn   18 (66)
                      .++.+.|||+.=
T Consensus        41 ~~~~~~kC~~~C   52 (126)
T 1ooh_A           41 PPSQDLMCYTKC   52 (126)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHH
T ss_conf             988031819999


No 10 
>>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} (A:1-92)
Probab=8.00  E-value=1.7e+02  Score=12.62  Aligned_cols=40  Identities=18%  Similarity=0.169  Sum_probs=0.0

Q ss_pred             CCHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9514431768889998521101267027789999998999997200
Q gi|254780513|r    1 MDKLDELNTKEFKCFLKNSRKKHITPSKDVVAKSIKKYEDRIRSSI   46 (66)
Q Consensus         1 mdkldelntkefkcflknsrkkhitpskdvvaksikkyedrirssi   46 (66)
                      +.|++++|.+|..-.-|+--.      ++..+.++++.+-|+..++
T Consensus        32 ~~k~~~~n~~El~gieKGFL~------kel~~eal~kl~Krik~~~   71 (92)
T 1t7s_A           32 LQKAYDLNLRDVADLERGFLE------KPKQVEXGKKLEKKVKYFN   71 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSC------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_conf             999986068888678851121------1988889998999999999


Done!