Query gi|254780513|ref|YP_003064926.1| hypothetical protein CLIBASIA_02000 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 66
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 20:11:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780513.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wcj_A General odorant-binding 21.7 14 0.00061 17.4 -0.2 12 7-18 43-54 (141)
2 1jrj_A Exendin-4; Trp-CAGE, GL 12.4 81 0.0034 13.5 1.8 24 3-26 13-36 (39)
3 1qwv_A PBP, pheromone-binding 12.1 27 0.0011 16.0 -0.8 12 6-17 42-53 (142)
4 1dqe_A PBP, pheromone-binding 10.4 49 0.0021 14.7 0.1 11 8-18 44-54 (137)
5 1ooh_A Odorant binding protein 9.4 99 0.0042 13.0 1.4 11 8-18 42-52 (126)
6 1hc1_A Arthropodan hemocyanin; 7.5 1.3E+02 0.0053 12.5 1.7 22 32-53 286-307 (657)
7 1ry3_A Carnocin CP52, bacterio 7.3 1E+02 0.0044 12.9 0.7 14 1-14 1-14 (64)
8 2qeb_A D7R4 protein; all-helic 7.3 1.1E+02 0.0048 12.7 0.9 11 10-20 93-103 (145)
9 1icw_A Interleukin-8, IL-8; cy 6.5 1.4E+02 0.0061 12.2 1.9 30 16-45 43-72 (72)
10 3gf6_A Uncharacterized bacteri 6.3 21 0.00087 16.6 -3.3 18 37-54 200-217 (224)
No 1
>2wcj_A General odorant-binding protein 1; transport protein, olfaction, transport, disulfide bond, insect pheremone, sensory transduction; HET: M21; 1.40A {Bombyx mori} PDB: 2wc6_A* 2wch_A* 2wck_A 2wcl_A* 2wcm_A* 2wc5_A*
Probab=21.73 E-value=14 Score=17.45 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHH
Q ss_conf 176888999852
Q gi|254780513|r 7 LNTKEFKCFLKN 18 (66)
Q Consensus 7 lntkefkcflkn 18 (66)
..+.++|||+.=
T Consensus 43 ~~d~~~KC~~~C 54 (141)
T 2wcj_A 43 VVHRELGCAIIC 54 (141)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCCCCCCEEEH
T ss_conf 889888984012
No 2
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=12.35 E-value=81 Score=13.51 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=18.1
Q ss_pred HHHHCCHHHHHHHHHHCCCCCCCH
Q ss_conf 144317688899985211012670
Q gi|254780513|r 3 KLDELNTKEFKCFLKNSRKKHITP 26 (66)
Q Consensus 3 kldelntkefkcflknsrkkhitp 26 (66)
-||+...|||--+|+|...+--.|
T Consensus 13 yLe~~aakdFv~WL~ng~ps~~ap 36 (39)
T 1jrj_A 13 QMEEEAVRLFIEWLKNGGPSSGAP 36 (39)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSSC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999999998289888998
No 3
>1qwv_A PBP, pheromone-binding protein; APOLPBP, hexahelical fold, PBP fold, transport protein; NMR {Antheraea polyphemus} SCOP: a.39.2.1 PDB: 1two_A 2jpo_A 2kph_A
Probab=12.14 E-value=27 Score=16.03 Aligned_cols=12 Identities=8% Similarity=0.299 Sum_probs=8.3
Q ss_pred HCCHHHHHHHHH
Q ss_conf 317688899985
Q gi|254780513|r 6 ELNTKEFKCFLK 17 (66)
Q Consensus 6 elntkefkcflk 17 (66)
+.++.++|||+.
T Consensus 42 ~~~d~~~KC~i~ 53 (142)
T 1qwv_A 42 VMTDRLAGCAIN 53 (142)
T ss_dssp CCCCHHHHHHHT
T ss_pred CCCCCCCCCEEE
T ss_conf 777987797401
No 4
>1dqe_A PBP, pheromone-binding protein; helical bundle, transport protein; HET: BOM; 1.80A {Bombyx mori} SCOP: a.39.2.1 PDB: 1gm0_A 1ls8_A 2fjy_A 2p71_A* 2p70_A* 1xfr_A
Probab=10.38 E-value=49 Score=14.66 Aligned_cols=11 Identities=18% Similarity=0.398 Sum_probs=6.4
Q ss_pred CHHHHHHHHHH
Q ss_conf 76888999852
Q gi|254780513|r 8 NTKEFKCFLKN 18 (66)
Q Consensus 8 ntkefkcflkn 18 (66)
.+.++|||+.=
T Consensus 44 ~d~~~KC~i~C 54 (137)
T 1dqe_A 44 KNRETGCAIMC 54 (137)
T ss_dssp CCHHHHHHHHH
T ss_pred CCCCCCCHHHH
T ss_conf 78666707979
No 5
>1ooh_A Odorant binding protein LUSH; alcohol, transport protein; 1.25A {Drosophila melanogaster} SCOP: a.39.2.1 PDB: 3b6x_A 2gte_A* 1oof_A 1ooi_X 1t14_A 1oog_A* 3b7a_A 3b86_A* 3b87_A* 3b88_A* 2qdi_A*
Probab=9.35 E-value=99 Score=13.05 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=7.3
Q ss_pred CHHHHHHHHHH
Q ss_conf 76888999852
Q gi|254780513|r 8 NTKEFKCFLKN 18 (66)
Q Consensus 8 ntkefkcflkn 18 (66)
++.+.|||++=
T Consensus 42 ~~~~~kCf~~C 52 (126)
T 1ooh_A 42 PSQDLMCYTKC 52 (126)
T ss_dssp CCHHHHHHHHH
T ss_pred CCCCHHHHHHH
T ss_conf 98104179999
No 6
>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A*
Probab=7.52 E-value=1.3e+02 Score=12.49 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 9999989999972003000376
Q gi|254780513|r 32 AKSIKKYEDRIRSSIDKKTFLT 53 (66)
Q Consensus 32 aksikkyedrirssidkktflt 53 (66)
..-++.||+||+..||...+.+
T Consensus 286 i~~le~~e~RI~daI~~G~v~~ 307 (657)
T 1hc1_A 286 VHDLEITESRIHEAIDHGYITD 307 (657)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEC
T ss_pred HHHHHHHHHHHHHHHHCCEEEC
T ss_conf 9999999999999997290887
No 7
>1ry3_A Carnocin CP52, bacteriocin carnobacteriocin B2; amphipathic helix, antibiotic; NMR {Carnobacterium maltaromaticum} SCOP: j.106.1.1
Probab=7.34 E-value=1e+02 Score=12.94 Aligned_cols=14 Identities=50% Similarity=0.703 Sum_probs=10.8
Q ss_pred CCHHHHCCHHHHHH
Q ss_conf 95144317688899
Q gi|254780513|r 1 MDKLDELNTKEFKC 14 (66)
Q Consensus 1 mdkldelntkefkc 14 (66)
|.+..|||.||.+-
T Consensus 1 Mk~vk~L~~kem~~ 14 (64)
T 1ry3_A 1 MNSVKELNVKEMKQ 14 (64)
T ss_dssp CCCHHHHHHHHHHT
T ss_pred CCHHHHHCHHHHHH
T ss_conf 93067728999863
No 8
>2qeb_A D7R4 protein; all-helical, odorant-binding protein, ligand binding protein; 2.00A {Anopheles gambiae} PDB: 2pql_A 2qeh_A* 2qeo_A* 2qev_A
Probab=7.30 E-value=1.1e+02 Score=12.73 Aligned_cols=11 Identities=36% Similarity=0.775 Sum_probs=7.3
Q ss_pred HHHHHHHHHCC
Q ss_conf 88899985211
Q gi|254780513|r 10 KEFKCFLKNSR 20 (66)
Q Consensus 10 kefkcflknsr 20 (66)
.-|+||++++-
T Consensus 93 ~~ykC~l~s~s 103 (145)
T 2qeb_A 93 VFYKCLLKSTT 103 (145)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHCCCC
T ss_conf 99989976852
No 9
>1icw_A Interleukin-8, IL-8; cytokine, chemokine; 2.01A {Homo sapiens} SCOP: d.9.1.1 PDB: 1ikl_A* 1ikm_A* 1il8_A 1ilp_A* 1ilq_A* 2il8_A 3il8_A 1qe6_A 1rod_A
Probab=6.45 E-value=1.4e+02 Score=12.19 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=24.0
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 852110126702778999999899999720
Q gi|254780513|r 16 LKNSRKKHITPSKDVVAKSIKKYEDRIRSS 45 (66)
Q Consensus 16 lknsrkkhitpskdvvaksikkyedrirss 45 (66)
+|+.++--..|...-|-+-|++...+-.||
T Consensus 43 ~k~g~~vC~dP~~~WVk~~i~~l~~k~~ss 72 (72)
T 1icw_A 43 LSDGRELALDPKENWVQRVVEKFLKRAENS 72 (72)
T ss_dssp ETTSCEEEECTTSHHHHHHHHHHHHHHTTC
T ss_pred EECCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 807978866988289999999998751489
No 10
>3gf6_A Uncharacterized bacterial lipoprotein; NP_810146.1, bacterial lipoprotein of unknown function, structural genomics; HET: MSE; 1.69A {Bacteroides thetaiotaomicron vpi-5482}
Probab=6.35 E-value=21 Score=16.62 Aligned_cols=18 Identities=44% Similarity=0.796 Sum_probs=13.3
Q ss_pred HHHHHHHHHCCCCEEEEE
Q ss_conf 899999720030003766
Q gi|254780513|r 37 KYEDRIRSSIDKKTFLTL 54 (66)
Q Consensus 37 kyedrirssidkktfltl 54 (66)
|-|||||-.|||..|..+
T Consensus 200 kre~rirlridkesyfei 217 (224)
T 3gf6_A 200 KRENRVRLRIDKESYFEL 217 (224)
T ss_dssp SSCEEEEEEECTTCEEEE
T ss_pred CCCCEEEEEECHHHHHHH
T ss_conf 210007888442677778
Done!