BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780513|ref|YP_003064926.1| hypothetical protein
CLIBASIA_02000 [Candidatus Liberibacter asiaticus str. psy62]
(66 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780513|ref|YP_003064926.1| hypothetical protein CLIBASIA_02000 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040190|gb|ACT56986.1| hypothetical protein CLIBASIA_02000 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 66
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MDKLDELNTKEFKCFLKNSRKKHITPSKDVVAKSIKKYEDRIRSSIDKKTFLTLSVYFEN 60
MDKLDELNTKEFKCFLKNSRKKHITPSKDVVAKSIKKYEDRIRSSIDKKTFLTLSVYFEN
Sbjct: 1 MDKLDELNTKEFKCFLKNSRKKHITPSKDVVAKSIKKYEDRIRSSIDKKTFLTLSVYFEN 60
Query: 61 HLIRIF 66
HLIRIF
Sbjct: 61 HLIRIF 66
Searching..................................................done
Results from round 2
CONVERGED!
>gi|254780513|ref|YP_003064926.1| hypothetical protein CLIBASIA_02000 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040190|gb|ACT56986.1| hypothetical protein CLIBASIA_02000 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 66
Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MDKLDELNTKEFKCFLKNSRKKHITPSKDVVAKSIKKYEDRIRSSIDKKTFLTLSVYFEN 60
MDKLDELNTKEFKCFLKNSRKKHITPSKDVVAKSIKKYEDRIRSSIDKKTFLTLSVYFEN
Sbjct: 1 MDKLDELNTKEFKCFLKNSRKKHITPSKDVVAKSIKKYEDRIRSSIDKKTFLTLSVYFEN 60
Query: 61 HLIRIF 66
HLIRIF
Sbjct: 61 HLIRIF 66
>gi|126700355|ref|YP_001089252.1| putative histidyl-tRNA synthetase [Clostridium difficile 630]
gi|254976335|ref|ZP_05272807.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-66c26]
gi|255093720|ref|ZP_05323198.1| putative histidyl-tRNA synthetase [Clostridium difficile CIP
107932]
gi|255101911|ref|ZP_05330888.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-63q42]
gi|255307780|ref|ZP_05351951.1| putative histidyl-tRNA synthetase [Clostridium difficile ATCC
43255]
gi|255315472|ref|ZP_05357055.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-76w55]
gi|255518135|ref|ZP_05385811.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-97b34]
gi|255651251|ref|ZP_05398153.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-37x79]
gi|255656727|ref|ZP_05402136.1| putative histidyl-tRNA synthetase [Clostridium difficile QCD-23m63]
gi|260684315|ref|YP_003215600.1| putative histidyl-tRNA synthetase [Clostridium difficile CD196]
gi|260687974|ref|YP_003219108.1| putative histidyl-tRNA synthetase [Clostridium difficile R20291]
gi|296452446|ref|ZP_06894147.1| histidine--tRNA ligase [Clostridium difficile NAP08]
gi|296877795|ref|ZP_06901821.1| histidine--tRNA ligase [Clostridium difficile NAP07]
gi|306521095|ref|ZP_07407442.1| histidyl-tRNA synthetase [Clostridium difficile QCD-32g58]
gi|122973671|sp|Q183H5|SYH_CLOD6 RecName: Full=Histidyl-tRNA synthetase; AltName:
Full=Histidine--tRNA ligase; Short=HisRS
gi|115251792|emb|CAJ69627.1| Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
[Clostridium difficile]
gi|260210478|emb|CBA64951.1| putative histidyl-tRNA synthetase [Clostridium difficile CD196]
gi|260213991|emb|CBE06103.1| putative histidyl-tRNA synthetase [Clostridium difficile R20291]
gi|296258776|gb|EFH05670.1| histidine--tRNA ligase [Clostridium difficile NAP08]
gi|296431246|gb|EFH17067.1| histidine--tRNA ligase [Clostridium difficile NAP07]
Length = 420
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 5 DELNTKEFKCFLKNSRKKHITPSKDVVAKSIK---KYEDRIRS 44
+E NT+ FK LK+ R+ HI+ KD + +S+K KY D+I S
Sbjct: 337 EEANTRSFK-LLKDLRQNHISADKDHIERSVKAQFKYSDKINS 378
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.321 0.136 0.377
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,242,393,876
Number of Sequences: 14124377
Number of extensions: 40711237
Number of successful extensions: 130228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 130226
Number of HSP's gapped (non-prelim): 4
length of query: 66
length of database: 4,842,793,630
effective HSP length: 38
effective length of query: 28
effective length of database: 4,306,067,304
effective search space: 120569884512
effective search space used: 120569884512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.7 bits)