RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780513|ref|YP_003064926.1| hypothetical protein CLIBASIA_02000 [Candidatus Liberibacter asiaticus str. psy62] (66 letters) >gnl|CDD|111344 pfam02438, Adeno_100, Late 100kD protein. The late 100kD protein is a non-structural viral protein involved in the transport of hexon from the cytoplasm to the nucleus. Length = 583 Score = 25.0 bits (55), Expect = 4.5 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Query: 4 LDELNTKEFKCFLKNSRKKHIT-PSKDVVAKSIKK 37 L+E N KE K L +++ T S+ +A+++ Sbjct: 330 LEEENLKELKKLLTRNKRALWTLFSERTIAEALAD 364 >gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334 Score = 24.2 bits (52), Expect = 8.5 Identities = 12/39 (30%), Positives = 19/39 (48%) Query: 23 HITPSKDVVAKSIKKYEDRIRSSIDKKTFLTLSVYFENH 61 H PS+ K + + DR+ + +L LSV FE + Sbjct: 274 HAVPSQRPTFKQLVEDLDRVLTVTSTDEYLDLSVPFEQY 312 >gnl|CDD|29516 cd01195, INT_Tn544B_C, Tn544B and related transposases, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes various bacterial transposases similar to TnpB from transposon Tn554.. Length = 195 Score = 23.8 bits (51), Expect = 9.5 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 4 LDELNTKEFK-----CFLKNSRKKHITPSKDVVAKSIKKYEDRIRSSIDK 48 L E +F C K K+HI P VA IK ED+ + + Sbjct: 47 LLEDKDGDFFYKYYQCIWKTKIKEHIIPISKKVALLIKVREDKTKELSTE 96 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.321 0.136 0.377 Gapped Lambda K H 0.267 0.0634 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 735,808 Number of extensions: 28069 Number of successful extensions: 82 Number of sequences better than 10.0: 1 Number of HSP's gapped: 82 Number of HSP's successfully gapped: 10 Length of query: 66 Length of database: 6,263,737 Length adjustment: 37 Effective length of query: 29 Effective length of database: 5,464,204 Effective search space: 158461916 Effective search space used: 158461916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.6 bits)