RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780513|ref|YP_003064926.1| hypothetical protein
CLIBASIA_02000 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)



>1dqe_A PBP, pheromone-binding protein; helical bundle; HET: BOM;
           1.80A {Bombyx mori} (A:)
          Length = 137

 Score = 23.9 bits (51), Expect = 7.1
 Identities = 7/20 (35%), Positives = 8/20 (40%)

Query: 12  FKCFLKNSRKKHITPSKDVV 31
             CF     K +  PS DV 
Sbjct: 115 ATCFKAEIHKLNWAPSMDVA 134


>3gf6_A Uncharacterized bacterial lipoprotein; NP_810146.1,
           bacterial lipoprotein of unknown function, structural
           genomics; HET: MSE; 1.69A {Bacteroides thetaiotaomicron
           vpi-5482} (A:)
          Length = 224

 Score = 23.4 bits (50), Expect = 9.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 36  KKYEDRIRSSIDKKTFLTL 54
           +K E+R+R  IDK+++  L
Sbjct: 199 QKRENRVRLRIDKESYFEL 217


>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta
          strand, copper, melanin biosynthesis, metal-binding,
          monooxygenase, oxidoreductase, secreted; 1.97A {Manduca
          sexta} (B:223-263,B:309-423)
          Length = 156

 Score = 23.6 bits (51), Expect = 9.8
 Identities = 3/20 (15%), Positives = 7/20 (35%)

Query: 34 SIKKYEDRIRSSIDKKTFLT 53
           +  + D+   +I K     
Sbjct: 42 KLFTWRDQFLEAIQKMAIKM 61


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 455,114
Number of extensions: 16278
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 10
Length of query: 66
Length of database: 4,956,049
Length adjustment: 34
Effective length of query: 32
Effective length of database: 3,806,679
Effective search space: 121813728
Effective search space used: 121813728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)