RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780513|ref|YP_003064926.1| hypothetical protein
CLIBASIA_02000 [Candidatus Liberibacter asiaticus str. psy62]
         (66 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.9 bits (58), Expect = 1.1
 Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 14/37 (37%)

Query: 17 KNSRKKHITPSKDVVAKSIKKYED------RIRSSID 47
          K + KK        +  S+K Y D       I+++++
Sbjct: 19 KQALKK--------LQASLKLYADDSAPALAIKATME 47


>2wcj_A General odorant-binding protein 1; transport protein, olfaction,
           transport, disulfide bond, insect pheremone, sensory
           transduction; HET: M21; 1.40A {Bombyx mori} PDB: 2wc6_A*
           2wch_A* 2wck_A 2wcl_A* 2wcm_A* 2wc5_A*
          Length = 141

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 12  FKCFLKNSRKKHITPSKDVVAKSIKKY 38
             CF ++SRK+ I P   +V   I+KY
Sbjct: 115 AACFKEDSRKEGIAPEVAMVEAVIEKY 141


>3gf6_A Uncharacterized bacterial lipoprotein; NP_810146.1, bacterial
           lipoprotein of unknown function, structural genomics;
           HET: MSE; 1.69A {Bacteroides thetaiotaomicron vpi-5482}
          Length = 224

 Score = 23.8 bits (51), Expect = 8.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 36  KKYEDRIRSSIDKKTFLTL 54
           +K E+R+R  IDK+++  L
Sbjct: 199 QKRENRVRLRIDKESYFEL 217


>1dqe_A PBP, pheromone-binding protein; helical bundle; HET: BOM; 1.80A
           {Bombyx mori} SCOP: a.39.2.1 PDB: 1gm0_A 1ls8_A 2fjy_A
           2p71_A* 2p70_A* 1xfr_A
          Length = 137

 Score = 23.8 bits (51), Expect = 9.9
 Identities = 7/20 (35%), Positives = 8/20 (40%)

Query: 12  FKCFLKNSRKKHITPSKDVV 31
             CF     K +  PS DV 
Sbjct: 115 ATCFKAEIHKLNWAPSMDVA 134


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 533,876
Number of extensions: 19535
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 6
Length of query: 66
Length of database: 5,693,230
Length adjustment: 37
Effective length of query: 29
Effective length of database: 4,796,202
Effective search space: 139089858
Effective search space used: 139089858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)