BLAST/PSIBLAST alignment of GI: 254780514 and GI: 283471714 at iteration 2

>gi|283471714|emb|CAQ50925.1| type II restriction enzyme SsoII (Endonuclease SsoII)(R.SsoII) [Staphylococcus aureus subsp. aureus ST398] Length = 306

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)

Query: 5   EIILKNISNNYEVP-KMLITELSTELF-NLKTANQNFFHN-TLTKKFGDYMSKITPYLYE 61
            II+  + N   +  K +  E S +L+ +L   +   + N T+ +    + SK T  +Y 
Sbjct: 49  SIIIDELRNQSWIEFKKIEKEFSKKLYSHLLDQDSENYKNMTVKEGIEKFTSKHTDEIYA 108

Query: 62  WVLSNTQSRRSRDGQEFEYII 82
             LSNTQSRRSR G+EFE II
Sbjct: 109 LQLSNTQSRRSRAGKEFESII 129