BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780514|ref|YP_003064927.1| type II restriction
endonuclease [Candidatus Liberibacter asiaticus str. psy62]
(110 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780514|ref|YP_003064927.1| type II restriction endonuclease [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040191|gb|ACT56987.1| type II restriction endonuclease [Candidatus Liberibacter asiaticus
str. psy62]
Length = 110
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY 60
MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY
Sbjct: 1 MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY 60
Query: 61 EWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKKSGKALSLSIM 110
EWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKKSGKALSLSIM
Sbjct: 61 EWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKKSGKALSLSIM 110
>gi|319407457|emb|CBI81107.1| putative type II restriction endonuclease [Bartonella sp. 1-1C]
Length = 302
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 54/85 (63%)
Query: 3 FNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLYEW 62
FN IL IS +E+PK +I+ELS +LF L + F+ L FG Y KI PY+Y
Sbjct: 84 FNSAILMEISQQFEMPKRVISELSLKLFQLNVCDSQKFNEQLVNCFGQYAEKIIPYIYAL 143
Query: 63 VLSNTQSRRSRDGQEFEYIIYSLYN 87
LSNTQSRRSR G+ FE IIY LYN
Sbjct: 144 CLSNTQSRRSRAGKTFEDIIYFLYN 168
>gi|150026186|ref|YP_001297012.1| type II restriction endonuclease [Flavobacterium psychrophilum
JIP02/86]
gi|149772727|emb|CAL44210.1| Probable type II restriction endonuclease [Flavobacterium
psychrophilum JIP02/86]
Length = 298
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 3 FNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLYEW 62
FN I+++++ E PK ++ L + N+ T+ + G+Y ++ PY+Y
Sbjct: 81 FNAILMRDLHKLLETPKDILEVLLNK--NITDKKGEELIETVKEICGEYAGRVFPYIYRL 138
Query: 63 VLSNTQSRRSRDGQEFEYIIYSLY 86
LSNTQSRRSR G+ FE IIY +Y
Sbjct: 139 SLSNTQSRRSRAGKSFEAIIYKIY 162
>gi|283471714|emb|CAQ50925.1| type II restriction enzyme SsoII (Endonuclease SsoII)(R.SsoII)
[Staphylococcus aureus subsp. aureus ST398]
Length = 306
Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 19 KMLITELSTELFN--LKTANQNFFHNTLTKKFGDYMSKITPYLYEWVLSNTQSRRSRDGQ 76
K + E S +L++ L ++N+ + T+ + + SK T +Y LSNTQSRRSR G+
Sbjct: 64 KKIEKEFSKKLYSHLLDQDSENYKNMTVKEGIEKFTSKHTDEIYALQLSNTQSRRSRAGK 123
Query: 77 EFEYII 82
EFE II
Sbjct: 124 EFESII 129
>gi|119026300|ref|YP_910145.1| restriction endonuclease RKpn2kI [Bifidobacterium adolescentis ATCC
15703]
gi|118765884|dbj|BAF40063.1| restriction endonuclease RKpn2kI [Bifidobacterium adolescentis ATCC
15703]
Length = 300
Score = 41.6 bits (96), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 51 YMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
++S ++YE LSNTQSRRSR G+EFE II
Sbjct: 95 FVSDYPQHIYELTLSNTQSRRSRAGKEFEAII 126
>gi|1657419|gb|AAC45970.1| truncated restrictase R.SenPI [Salmonella enterica subsp. enterica
serovar Enteritidis]
Length = 264
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 50 DYMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
D+ + ++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 96 DFTMEYPTHIYDLALSNTQSRRSRAGKEFESIL 128
>gi|323974124|gb|EGB69258.1| EcoRII [Escherichia coli TW10509]
Length = 305
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 50 DYMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
D+ + ++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 96 DFTMEYPTHIYDLALSNTQSRRSRAGKEFESIL 128
>gi|32470130|ref|NP_863574.1| restriction endonuclease RKpn2kI [Klebsiella pneumoniae]
gi|464833|sp|P34880|T2S2_SHISO RecName: Full=Type-2 restriction enzyme SsoII; Short=R.SsoII;
AltName: Full=Endonuclease SsoII; AltName: Full=Type II
restriction enzyme SsoII
gi|11559817|gb|AAG38100.1|AF300473_1 restriction endonuclease RKpn2kI [Klebsiella pneumoniae]
gi|294245|gb|AAA98280.1| restriction endonuclease [Plasmid P4]
gi|323968853|gb|EGB64189.1| EcoRII [Escherichia coli TA007]
Length = 305
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 50 DYMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
D+ + ++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 96 DFTMEYPTHIYDLALSNTQSRRSRAGKEFESIL 128
>gi|3421012|emb|CAA76527.1| R.Ecl18kI (restriction endonuclease) [Enterobacter cloacae]
Length = 305
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 50 DYMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
D+ + ++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 96 DFTMEYPTHIYDLALSNTQSRRSRAGKEFESIL 128
>gi|1871452|dbj|BAA11168.1| restriction endonuclease [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 318
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 50 DYMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
D+ + ++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 109 DFTMEYPTHIYDLALSNTQSRRSRAGKEFESIL 141
>gi|110590214|pdb|2GB7|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
gi|110590215|pdb|2GB7|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
gi|110590216|pdb|2GB7|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
gi|110590217|pdb|2GB7|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
gi|110591455|pdb|2FQZ|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
gi|110591456|pdb|2FQZ|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
gi|110591457|pdb|2FQZ|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
gi|110591458|pdb|2FQZ|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
Length = 305
Score = 38.1 bits (87), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 50 DYMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
D+ + ++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 96 DFTMEYPTHIYDLALSNTQSRRSRAGKEFESIL 128
>gi|319893524|ref|YP_004150399.1| restriction endonuclease [Staphylococcus pseudintermedius HKU10-03]
gi|317163220|gb|ADV06763.1| restriction endonuclease [Staphylococcus pseudintermedius HKU10-03]
Length = 298
Score = 37.4 bits (85), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 51 YMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
++ ++Y LSNTQSRRSR G+EFE II
Sbjct: 94 FVENFPDHIYRLSLSNTQSRRSRAGKEFEIII 125
>gi|255941182|ref|XP_002561360.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585983|emb|CAP93720.1| Pc16g10500 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 2162
Score = 35.4 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 18 PKMLITELSTEL---FNLKTANQNFFHNT-LTKKFGDYMSKITPYLYEWVLSNTQSRRSR 73
PK LI L T + NL+ AN F + T DY S +T + R R
Sbjct: 2052 PKALILNLGTSMAAGLNLQCANHVIFLSPYFTTSHHDYDSGMTQAI---------GRARR 2102
Query: 74 DGQEFEYIIYSLYNINTFVTHLMHKKKSGK 103
GQE E +Y L NT+ ++ K +S K
Sbjct: 2103 FGQEREVYVYHLLVKNTYDVNIFQKAQSSK 2132
Searching..................................................done
Results from round 2
>gi|254780514|ref|YP_003064927.1| type II restriction endonuclease [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040191|gb|ACT56987.1| type II restriction endonuclease [Candidatus Liberibacter asiaticus
str. psy62]
Length = 110
Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY 60
MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY
Sbjct: 1 MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY 60
Query: 61 EWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKKSGKALSLSIM 110
EWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKKSGKALSLSIM
Sbjct: 61 EWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKKSGKALSLSIM 110
>gi|319407457|emb|CBI81107.1| putative type II restriction endonuclease [Bartonella sp. 1-1C]
Length = 302
Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 54/85 (63%)
Query: 3 FNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLYEW 62
FN IL IS +E+PK +I+ELS +LF L + F+ L FG Y KI PY+Y
Sbjct: 84 FNSAILMEISQQFEMPKRVISELSLKLFQLNVCDSQKFNEQLVNCFGQYAEKIIPYIYAL 143
Query: 63 VLSNTQSRRSRDGQEFEYIIYSLYN 87
LSNTQSRRSR G+ FE IIY LYN
Sbjct: 144 CLSNTQSRRSRAGKTFEDIIYFLYN 168
>gi|150026186|ref|YP_001297012.1| type II restriction endonuclease [Flavobacterium psychrophilum
JIP02/86]
gi|149772727|emb|CAL44210.1| Probable type II restriction endonuclease [Flavobacterium
psychrophilum JIP02/86]
Length = 298
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 1 MQFNEIILKNISNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLY 60
+ FN I+++++ E PK ++ L + N+ T+ + G+Y ++ PY+Y
Sbjct: 79 VNFNAILMRDLHKLLETPKDILEVLLNK--NITDKKGEELIETVKEICGEYAGRVFPYIY 136
Query: 61 EWVLSNTQSRRSRDGQEFEYIIYSLY 86
LSNTQSRRSR G+ FE IIY +Y
Sbjct: 137 RLSLSNTQSRRSRAGKSFEAIIYKIY 162
>gi|119026300|ref|YP_910145.1| restriction endonuclease RKpn2kI [Bifidobacterium adolescentis ATCC
15703]
gi|118765884|dbj|BAF40063.1| restriction endonuclease RKpn2kI [Bifidobacterium adolescentis ATCC
15703]
Length = 300
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 36 NQNFFHNTLTKKFGDYMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
+ + K DY ++YE LSNTQSRRSR G+EFE II
Sbjct: 84 KGMEAVDAIKKFVSDYPQ----HIYELTLSNTQSRRSRAGKEFEAII 126
>gi|283471714|emb|CAQ50925.1| type II restriction enzyme SsoII (Endonuclease SsoII)(R.SsoII)
[Staphylococcus aureus subsp. aureus ST398]
Length = 306
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 5 EIILKNISNNYEVP-KMLITELSTELF-NLKTANQNFFHN-TLTKKFGDYMSKITPYLYE 61
II+ + N + K + E S +L+ +L + + N T+ + + SK T +Y
Sbjct: 49 SIIIDELRNQSWIEFKKIEKEFSKKLYSHLLDQDSENYKNMTVKEGIEKFTSKHTDEIYA 108
Query: 62 WVLSNTQSRRSRDGQEFEYII 82
LSNTQSRRSR G+EFE II
Sbjct: 109 LQLSNTQSRRSRAGKEFESII 129
>gi|319893524|ref|YP_004150399.1| restriction endonuclease [Staphylococcus pseudintermedius HKU10-03]
gi|317163220|gb|ADV06763.1| restriction endonuclease [Staphylococcus pseudintermedius HKU10-03]
Length = 298
Score = 42.7 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 12 SNNYEVPKMLITELSTELFNLKTANQNFFHNTLTKKFGDYMSKITPYLYEWVLSNTQSRR 71
++N+E L E S E++ + ++ ++Y LSNTQSRR
Sbjct: 55 TSNWEEYLKLEEEFSGEMYESLIDKNKILGLDNIESIKWFVENFPDHIYRLSLSNTQSRR 114
Query: 72 SRDGQEFEYII 82
SR G+EFE II
Sbjct: 115 SRAGKEFEIII 125
>gi|1657419|gb|AAC45970.1| truncated restrictase R.SenPI [Salmonella enterica subsp. enterica
serovar Enteritidis]
Length = 264
Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 58 YLYEWVLSNTQSRRSRDGQEFEYII 82
++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 104 HIYDLALSNTQSRRSRAGKEFESIL 128
>gi|32470130|ref|NP_863574.1| restriction endonuclease RKpn2kI [Klebsiella pneumoniae]
gi|464833|sp|P34880|T2S2_SHISO RecName: Full=Type-2 restriction enzyme SsoII; Short=R.SsoII;
AltName: Full=Endonuclease SsoII; AltName: Full=Type II
restriction enzyme SsoII
gi|11559817|gb|AAG38100.1|AF300473_1 restriction endonuclease RKpn2kI [Klebsiella pneumoniae]
gi|294245|gb|AAA98280.1| restriction endonuclease [Plasmid P4]
gi|323968853|gb|EGB64189.1| EcoRII [Escherichia coli TA007]
Length = 305
Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 58 YLYEWVLSNTQSRRSRDGQEFEYII 82
++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 104 HIYDLALSNTQSRRSRAGKEFESIL 128
>gi|323974124|gb|EGB69258.1| EcoRII [Escherichia coli TW10509]
Length = 305
Score = 40.8 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 58 YLYEWVLSNTQSRRSRDGQEFEYII 82
++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 104 HIYDLALSNTQSRRSRAGKEFESIL 128
>gi|3421012|emb|CAA76527.1| R.Ecl18kI (restriction endonuclease) [Enterobacter cloacae]
Length = 305
Score = 40.8 bits (94), Expect = 0.065, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 58 YLYEWVLSNTQSRRSRDGQEFEYII 82
++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 104 HIYDLALSNTQSRRSRAGKEFESIL 128
>gi|110590214|pdb|2GB7|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
gi|110590215|pdb|2GB7|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
gi|110590216|pdb|2GB7|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
gi|110590217|pdb|2GB7|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved, Modified
Dna
gi|110591455|pdb|2FQZ|A Chain A, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
gi|110591456|pdb|2FQZ|B Chain B, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
gi|110591457|pdb|2FQZ|C Chain C, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
gi|110591458|pdb|2FQZ|D Chain D, Metal-Depleted Ecl18ki In Complex With Uncleaved Dna
Length = 305
Score = 40.8 bits (94), Expect = 0.068, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 58 YLYEWVLSNTQSRRSRDGQEFEYII 82
++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 104 HIYDLALSNTQSRRSRAGKEFESIL 128
>gi|1871452|dbj|BAA11168.1| restriction endonuclease [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 318
Score = 40.4 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 58 YLYEWVLSNTQSRRSRDGQEFEYII 82
++Y+ LSNTQSRRSR G+EFE I+
Sbjct: 117 HIYDLALSNTQSRRSRAGKEFESIL 141
>gi|169606986|ref|XP_001796913.1| hypothetical protein SNOG_06545 [Phaeosphaeria nodorum SN15]
gi|160707127|gb|EAT86376.2| hypothetical protein SNOG_06545 [Phaeosphaeria nodorum SN15]
Length = 689
Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 17 VPKMLITELSTEL---FNLKTA---NQNFFHNTLTKKFGDYMS--KITPYLYEWVLSNTQ 68
VP+ ++ + L F+ N+ H + +KF I P LYE L Q
Sbjct: 286 VPRDVVELVRKTLRPGFHFAKCVDENEEPTHQRVPQKFVSVAGFENIIPTLYELTLREHQ 345
Query: 69 SRRSRDGQEFEYIIYS 84
+ +S + F+ I+Y
Sbjct: 346 AAQSGQARPFKAIMYF 361
>gi|224543424|ref|ZP_03683963.1| hypothetical protein CATMIT_02633 [Catenibacterium mitsuokai DSM
15897]
gi|224523657|gb|EEF92762.1| hypothetical protein CATMIT_02633 [Catenibacterium mitsuokai DSM
15897]
Length = 489
Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 20/126 (15%)
Query: 1 MQFNEIILKNISNNYEVPKMLITELS--------------------TELFNLKTANQNFF 40
+Q +E L+ I E + +I + T L N +
Sbjct: 34 LQLDEFQLEEIDEKLETAQDIIDHILDYAVEKGMISDSVTEKDLFDTRLMNCLMPRPSEV 93
Query: 41 HNTLTKKFGDYMSKITPYLYEWVLSNTQSRRSRDGQEFEYIIYSLYNINTFVTHLMHKKK 100
N + + K T Y Y+ +S+ R+SR + ++ Y Y +L +K
Sbjct: 94 VNKFNTLYNESPEKATDYFYDLSISSNYIRKSRIDKNIKFNHYVKYGDIQITINLSKPEK 153
Query: 101 SGKALS 106
KA++
Sbjct: 154 DPKAIA 159
>gi|326436636|gb|EGD82206.1| RNA polymerase III subunit C11 [Salpingoeca sp. ATCC 50818]
Length = 108
Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 35 ANQNFFHNTLTKKFGDYMSKITPYLYEWVLSNTQSRRSRDGQEFEYII 82
+T + + + PY +E + SR+SR+ ++ E II
Sbjct: 9 CTNQLVLDTSAECGTHFACRTCPYKHEMNMPVVSSRKSRNPKQVEDII 56
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.321 0.135 0.356
Lambda K H
0.267 0.0404 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,879,657,958
Number of Sequences: 14124377
Number of extensions: 64991812
Number of successful extensions: 177988
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 177951
Number of HSP's gapped (non-prelim): 58
length of query: 110
length of database: 4,842,793,630
effective HSP length: 78
effective length of query: 32
effective length of database: 3,741,092,224
effective search space: 119714951168
effective search space used: 119714951168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)