Query gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 42
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 21:05:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780515.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gb7_A R.ECL18KI; ECL18KI-DNA 95.0 0.012 5E-07 32.3 2.8 36 1-36 201-236 (305)
2 3bm3_A PSPGI restriction endon 93.6 0.017 7E-07 31.6 1.1 31 2-32 185-215 (272)
3 1na6_A Ecorii, restriction end 93.1 0.016 6.8E-07 31.7 0.4 35 2-36 342-376 (404)
4 1nh2_C Transcription initiatio 3.8 2.2E+02 0.0093 12.1 0.6 21 18-38 28-48 (79)
5 3h74_A Pyridoxal kinase; PSI-I 2.8 2.8E+02 0.012 11.6 0.3 25 10-34 85-109 (282)
6 1rm1_C Transcription initiatio 2.8 3.3E+02 0.014 11.3 0.6 22 18-39 235-256 (286)
7 3jsz_A LGT1, putative uncharac 2.7 3.4E+02 0.014 11.3 0.7 34 7-40 170-208 (525)
8 1nvp_C Transcription initiatio 2.6 3.5E+02 0.015 11.2 0.7 18 21-38 29-46 (76)
9 1o8r_A Guanylin; prohormone, G 2.6 3.1E+02 0.013 11.4 0.3 14 29-42 10-23 (94)
10 2kc8_B Antitoxin RELB; protein 2.5 3.7E+02 0.015 11.1 1.3 25 9-33 11-35 (36)
No 1
>2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction endonuclease, nucleotide flipping, base extrusion, hydrolase/DNA complex; HET: DNA; 1.70A {Enterobacter cloacae} PDB: 2fqz_A*
Probab=94.97 E-value=0.012 Score=32.34 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCEEEEEEECCHHHHHHHHHHCCCCEEEEEEHHHHH
Q ss_conf 971799985003221055320335389998520113
Q gi|254780515|r 1 MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKK 36 (42)
Q Consensus 1 mptihlltvdseiaenkaeridkhniilvvldkvkk 36 (42)
.|.+||+|.+..|.+|+..-+..||++|||-..+++
T Consensus 201 I~~~~L~TL~~~IS~~q~~eM~~~~v~LVVp~~~~s 236 (305)
T 2gb7_A 201 IREMYLATLDDSFSEETINILYEANVVVVTTVENKN 236 (305)
T ss_dssp CSCEEEEECCSCCCHHHHHHHHHTTEEEEECHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCEEEEECHHHCC
T ss_conf 763599862788898999999977909995534247
No 2
>3bm3_A PSPGI restriction endonuclease; endonuclease-DNA complex, restriction enzyme, PSPGI, base flipping, hydrolase/DNA complex; HET: DNA MSE CIT; 1.70A {Pyrococcus SP}
Probab=93.59 E-value=0.017 Score=31.63 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=27.8
Q ss_pred CEEEEEEECCHHHHHHHHHHCCCCEEEEEEH
Q ss_conf 7179998500322105532033538999852
Q gi|254780515|r 2 PTIHLLTVDSEIAENKAERIDKHNIILVVLD 32 (42)
Q Consensus 2 ptihlltvdseiaenkaeridkhniilvvld 32 (42)
|.|+|+|+|.+|.+|++--+-.|||++|+.-
T Consensus 185 ~~iYL~TlDediS~nk~~eM~e~~I~~V~v~ 215 (272)
T 3bm3_A 185 INFWFVGFDEEFTIYSAIAMLDNGIDRVYVI 215 (272)
T ss_dssp CCEEEEECCTTCCHHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 7479998335344999999997693799904
No 3
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.13 E-value=0.016 Score=31.70 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=31.4
Q ss_pred CEEEEEEECCHHHHHHHHHHCCCCEEEEEEHHHHH
Q ss_conf 71799985003221055320335389998520113
Q gi|254780515|r 2 PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKK 36 (42)
Q Consensus 2 ptihlltvdseiaenkaeridkhniilvvldkvkk 36 (42)
+.+||+|.+..|.+|+..-...||++|||-..++.
T Consensus 342 ~~khL~TL~~gIS~~q~~EM~~~~l~LVvP~~l~~ 376 (404)
T 1na6_A 342 HQVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHK 376 (404)
T ss_dssp ---CEEECCSCCCHHHHHHHHTTTCCEECCHHHHT
T ss_pred HHHEEEECCCCCCHHHHHHHHHCCEEEEECHHHHH
T ss_conf 20137862788887899999877959997268753
No 4
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=3.82 E-value=2.2e+02 Score=12.11 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=15.2
Q ss_pred HHHHCCCCEEEEEEHHHHHHH
Q ss_conf 532033538999852011334
Q gi|254780515|r 18 AERIDKHNIILVVLDKVKKEK 38 (42)
Q Consensus 18 aeridkhniilvvldkvkkek 38 (42)
.+-..-.|++|...|||.+-|
T Consensus 28 e~~~~~~n~vlc~ydKV~R~K 48 (79)
T 1nh2_C 28 EEDGPDENLMLCLYDKVTRTK 48 (79)
T ss_dssp ------CCEEEEEEEEEEEET
T ss_pred CCCCCCCCEEEEEEEEEEEEC
T ss_conf 456665868999988875206
No 5
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=2.84 E-value=2.8e+02 Score=11.61 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEHHH
Q ss_conf 0032210553203353899985201
Q gi|254780515|r 10 DSEIAENKAERIDKHNIILVVLDKV 34 (42)
Q Consensus 10 dseiaenkaeridkhniilvvldkv 34 (42)
+.++++.-++.+++++...+|+|-|
T Consensus 85 s~~~i~~i~~~l~~~~~~~vV~DPV 109 (282)
T 3h74_A 85 SVALCQQITTYLEQQTLSLLVVDPV 109 (282)
T ss_dssp SHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCE
T ss_conf 9899999999999789980997664
No 6
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=2.77 E-value=3.3e+02 Score=11.33 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=15.9
Q ss_pred HHHHCCCCEEEEEEHHHHHHHH
Q ss_conf 5320335389998520113343
Q gi|254780515|r 18 AERIDKHNIILVVLDKVKKEKH 39 (42)
Q Consensus 18 aeridkhniilvvldkvkkekh 39 (42)
.+-.+--||+|...|||..-|.
T Consensus 235 ~ed~~~~~vvlc~ydKV~R~Kn 256 (286)
T 1rm1_C 235 EEDGPDENLMLCLYDKVTRTKA 256 (286)
T ss_dssp --CSTTSCEEEEEEEEEEEETT
T ss_pred CCCCCCCCEEEEEECEEEECCC
T ss_conf 4456657678853210533156
No 7
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=2.74 E-value=3.4e+02 Score=11.25 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=21.8
Q ss_pred EEECCHHHHHHHH-----HHCCCCEEEEEEHHHHHHHHH
Q ss_conf 9850032210553-----203353899985201133430
Q gi|254780515|r 7 LTVDSEIAENKAE-----RIDKHNIILVVLDKVKKEKHL 40 (42)
Q Consensus 7 ltvdseiaenkae-----ridkhniilvvldkvkkekhl 40 (42)
|..+|.+-..+|- --+++||+++-+|.++.|+.|
T Consensus 170 LVYsStlLn~~a~~ql~~faken~IsllDiDs~e~e~~L 208 (525)
T 3jsz_A 170 LIYSSSLLNPEANRQMKAFAKKQNISLIDIDSVKTDSPL 208 (525)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHTTEEEEEGGGCCCCCTH
T ss_pred EEEEHHHCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
T ss_conf 996113238899999999987569337632113321778
No 8
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=2.65 E-value=3.5e+02 Score=11.19 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=14.1
Q ss_pred HCCCCEEEEEEHHHHHHH
Q ss_conf 033538999852011334
Q gi|254780515|r 21 IDKHNIILVVLDKVKKEK 38 (42)
Q Consensus 21 idkhniilvvldkvkkek 38 (42)
-+-.|++|...|||.+-|
T Consensus 29 ~~~~n~vlc~ydKV~R~k 46 (76)
T 1nvp_C 29 FDTENVVVCQYDKIHRSK 46 (76)
T ss_dssp -CCCCEEEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEEEEC
T ss_conf 676858999988876305
No 9
>1o8r_A Guanylin; prohormone, GAP-I, precursor, prosequence; NMR {Homo sapiens} SCOP: d.234.1.1
Probab=2.60 E-value=3.1e+02 Score=11.42 Aligned_cols=14 Identities=50% Similarity=0.610 Sum_probs=8.5
Q ss_pred EEEHHHHHHHHHCC
Q ss_conf 98520113343049
Q gi|254780515|r 29 VVLDKVKKEKHLKE 42 (42)
Q Consensus 29 vvldkvkkekhlke 42 (42)
+-|+-|||-|.|.|
T Consensus 10 f~LESVKkLkdL~e 23 (94)
T 1o8r_A 10 FSLESVKKLKDLQE 23 (94)
T ss_dssp ECSHHHHTTTTCCS
T ss_pred EEHHHHHHHHHHHH
T ss_conf 62899998999873
No 10
>2kc8_B Antitoxin RELB; protein/protein complex, toxin RELE, repressor, stress response, transcription, transcription regulation; NMR {Escherichia coli}
Probab=2.47 E-value=3.7e+02 Score=11.07 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=19.3
Q ss_pred ECCHHHHHHHHHHCCCCEEEEEEHH
Q ss_conf 5003221055320335389998520
Q gi|254780515|r 9 VDSEIAENKAERIDKHNIILVVLDK 33 (42)
Q Consensus 9 vdseiaenkaeridkhniilvvldk 33 (42)
-|.|..|--.|||..-.-.-|.||.
T Consensus 11 ~dael~eivker~rnpkpvrv~ld~ 35 (36)
T 2kc8_B 11 EDAELVEIVKERLRNPKPVRVTLDE 35 (36)
T ss_dssp SHHHHHHHHHHHHTSCCEEEECSSC
T ss_pred CCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 1168999999981599885775457
Done!