BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780515|ref|YP_003064928.1| hypothetical protein
CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62]
         (42 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040192|gb|ACT56988.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 42

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/42 (100%), Positives = 42/42 (100%)

Query: 1  MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
          MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE
Sbjct: 1  MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42


>gi|319407457|emb|CBI81107.1| putative type II restriction endonuclease [Bartonella sp. 1-1C]
          Length = 302

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 34/39 (87%)

Query: 2   PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHL 40
           P IHLLTVDS+I+ NK E+++KHNI+LVVLD +KK++ +
Sbjct: 237 PNIHLLTVDSDISVNKIEQMNKHNIVLVVLDTIKKQEKV 275


>gi|261400949|ref|ZP_05987074.1| type II restriction enzyme SsoII [Neisseria lactamica ATCC 23970]
 gi|269209192|gb|EEZ75647.1| type II restriction enzyme SsoII [Neisseria lactamica ATCC 23970]
          Length = 132

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/42 (52%), Positives = 33/42 (78%)

Query: 1   MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
           +P I+LLTVD +I+ENK  +++ HNI+LVV   +KK+ HLK+
Sbjct: 67  VPNIYLLTVDDDISENKVIQMNNHNIVLVVPQNIKKQPHLKD 108


>gi|313667523|ref|YP_004047807.1| restriction endonuclease [Neisseria lactamica ST-640]
 gi|309378246|emb|CBX23131.1| putative Type II restriction endonuclease R.NlaX [Neisseria
           lactamica Y92-1009]
 gi|313004985|emb|CBN86413.1| putative restriction endonuclease [Neisseria lactamica 020-06]
          Length = 132

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 31/42 (73%)

Query: 1   MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
           +P I+LLTVD +I+ENK  +++ HNI+ VV   +K + HLK+
Sbjct: 67  VPNIYLLTVDDDISENKVIQMNNHNIVPVVPQSIKNQPHLKD 108


>gi|150026186|ref|YP_001297012.1| type II restriction endonuclease [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772727|emb|CAL44210.1| Probable type II restriction endonuclease [Flavobacterium
           psychrophilum JIP02/86]
          Length = 298

 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 1   MPTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLK 41
           +P IHLLT D  I ++KA+ +  HNII+V  + V     LK
Sbjct: 231 IPEIHLLTADESIPKSKAQEMANHNIIVVTYEWVANSVALK 271


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.315    0.133    0.350 

Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,303,797
Number of Sequences: 14124377
Number of extensions: 5475363
Number of successful extensions: 9218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9213
Number of HSP's gapped (non-prelim): 5
length of query: 42
length of database: 4,842,793,630
effective HSP length: 16
effective length of query: 26
effective length of database: 4,616,803,598
effective search space: 120036893548
effective search space used: 120036893548
T: 11
A: 40
X1: 15 ( 6.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 76 (33.8 bits)