RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780515|ref|YP_003064928.1| hypothetical protein
CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62]
         (42 letters)



>gnl|CDD|29353 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine
           phosphate kinase (HMPP-kinase) catalyzes two consecutive
           phosphorylation steps in the thiamine phosphate
           biosynthesis pathway, leading to the synthesis of
           vitamin B1. The first step is the phosphorylation of the
           hydroxyl group of HMP to form
           4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate
           (HMP-P) and then the phophorylation of HMP-P to form
           4-amino-5-hydroxymethyl-2-methyl-pyrimidine
           pyrophosphate (HMP-PP), which is the substrate for the
           thiamine synthase coupling reaction..
          Length = 242

 Score = 25.5 bits (56), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 10  DSEIAENKAERIDKHNIILVVLDKV 34
            +EI E  AE +  +  I VVLD V
Sbjct: 79  SAEIIEAVAEALKDYPDIPVVLDPV 103


>gnl|CDD|30700 COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine
           kinase [Coenzyme metabolism].
          Length = 263

 Score = 24.8 bits (54), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 10  DSEIAENKAERIDKHNIILVVLDKV 34
            +EI E  AE++ K+ I  VVLD V
Sbjct: 83  SAEIIEVVAEKLKKYGIGPVVLDPV 107


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 451,363
Number of extensions: 12849
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 5
Length of query: 42
Length of database: 6,263,737
Length adjustment: 16
Effective length of query: 26
Effective length of database: 5,917,993
Effective search space: 153867818
Effective search space used: 153867818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.4 bits)