RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780515|ref|YP_003064928.1| hypothetical protein CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62] (42 letters) >gnl|CDD|29353 cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.. Length = 242 Score = 25.5 bits (56), Expect = 3.7 Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 10 DSEIAENKAERIDKHNIILVVLDKV 34 +EI E AE + + I VVLD V Sbjct: 79 SAEIIEAVAEALKDYPDIPVVLDPV 103 >gnl|CDD|30700 COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]. Length = 263 Score = 24.8 bits (54), Expect = 5.9 Identities = 12/25 (48%), Positives = 16/25 (64%) Query: 10 DSEIAENKAERIDKHNIILVVLDKV 34 +EI E AE++ K+ I VVLD V Sbjct: 83 SAEIIEVVAEKLKKYGIGPVVLDPV 107 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.315 0.133 0.350 Gapped Lambda K H 0.267 0.0727 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 451,363 Number of extensions: 12849 Number of successful extensions: 45 Number of sequences better than 10.0: 1 Number of HSP's gapped: 45 Number of HSP's successfully gapped: 5 Length of query: 42 Length of database: 6,263,737 Length adjustment: 16 Effective length of query: 26 Effective length of database: 5,917,993 Effective search space: 153867818 Effective search space used: 153867818 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 51 (23.4 bits)