RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780515|ref|YP_003064928.1| hypothetical protein
CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62]
         (42 letters)



>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction,
           mutation, replication, hydrolase; 2.10A {Escherichia
           coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
          Length = 404

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 2   PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKK 36
             +HL T+   ++  +   + +  + LVV   + K
Sbjct: 342 HQVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHK 376


>2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction endonuclease,
           nucleotide flipping, base extrusion, hydrolase/DNA
           complex; HET: DNA; 1.70A {Enterobacter cloacae} PDB:
           2fqz_A*
          Length = 305

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 2   PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKH 39
             ++L T+D   +E     + + N+++V   + K  K+
Sbjct: 202 REMYLATLDDSFSEETINILYEANVVVVTTVENKNFKY 239


>3bm3_A PSPGI restriction endonuclease; endonuclease-DNA complex,
           restriction enzyme, PSPGI, base flipping, hydrolase/DNA
           complex; HET: DNA MSE CIT; 1.70A {Pyrococcus SP}
          Length = 272

 Score = 31.1 bits (70), Expect = 0.059
 Identities = 6/41 (14%), Positives = 14/41 (34%)

Query: 2   PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKEKHLKE 42
                +  D E     A  +  + I  V +   + +  ++E
Sbjct: 185 INFWFVGFDEEFTIYSAIAMLDNGIDRVYVIDGRYDSLIEE 225


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 332,529
Number of extensions: 8655
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 5
Length of query: 42
Length of database: 5,693,230
Length adjustment: 15
Effective length of query: 27
Effective length of database: 5,329,570
Effective search space: 143898390
Effective search space used: 143898390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.4 bits)