RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780515|ref|YP_003064928.1| hypothetical protein
CLIBASIA_02010 [Candidatus Liberibacter asiaticus str. psy62]
         (42 letters)



>d1na6a2 c.52.1.22 (A:179-398) Restriction endonuclease EcoRII,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 220

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 7/36 (19%), Positives = 17/36 (47%)

Query: 2   PTIHLLTVDSEIAENKAERIDKHNIILVVLDKVKKE 37
             +HL T+   ++  +   + +  + LVV   + K+
Sbjct: 164 HQVHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKK 199


>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 497

 Score = 24.9 bits (54), Expect = 2.1
 Identities = 4/21 (19%), Positives = 9/21 (42%)

Query: 5   HLLTVDSEIAENKAERIDKHN 25
           +   V  +   +    +DK+N
Sbjct: 477 NFTEVHPDYGSHIQALLDKYN 497


>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 305

 Score = 23.3 bits (50), Expect = 6.4
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 3   TIHLLTVDS-EIAENK----AERIDKHNIILVVLDKVKKEKHLKE 42
            ++     S   A+N       RI+K N+ + +L K   EK +K 
Sbjct: 187 ILNFNHQASFAEAKNDWDERKTRINKKNLFVKMLIKDDNEKLVKR 231


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 144,674
Number of extensions: 3745
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 3
Length of query: 42
Length of database: 2,407,596
Length adjustment: 15
Effective length of query: 27
Effective length of database: 2,201,646
Effective search space: 59444442
Effective search space used: 59444442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.1 bits)