HHsearch alignment for GI: 254780516 and conserved domain: COG0030

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=93.80  E-value=0.16  Score=28.06  Aligned_cols=69  Identities=20%  Similarity=0.297  Sum_probs=52.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC---C-CCCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf             6964107947889999872220895699998069555112220012---3-323211589753657887199986899
Q gi|254780516|r    3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---N-TLIFGDIAKIKTQDIPDHDVLLAGFPC   76 (83)
Q Consensus         3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~---~-~~~~~DI~~~~~~~~~~~D~l~gG~PC   76 (83)
T Consensus        33 ~VlEIGpG~GaLT~~Ll~~~-----~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY  105 (259)
T COG0030          33 NVLEIGPGLGALTEPLLERA-----ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLPY  105 (259)
T ss_pred             EEEEECCCCCHHHHHHHHHC-----CEEEEEEECHHHHHHHHHHHCCCCCEEEEECCHHCCCCHHHCCCCEEEECCCC
T ss_conf             69997898778899999606-----95799996889999999750656655999472424751351578889980897