HHsearch alignment for GI: 254780516 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=93.80 E-value=0.16 Score=28.06 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=52.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCC---C-CCCCCEEEEEECCCCCCCEEEEECCCC
Q ss_conf 6964107947889999872220895699998069555112220012---3-323211589753657887199986899
Q gi|254780516|r 3 KITDLFCGIGGIRLDLEQTFNHRNVECFFSSEINPYSVKTYQANFP---N-TLIFGDIAKIKTQDIPDHDVLLAGFPC 76 (83)
Q Consensus 3 ~v~~LFsG~GG~~~gl~~a~~~~~~~~v~a~e~d~~a~~~y~~n~~---~-~~~~~DI~~~~~~~~~~~D~l~gG~PC 76 (83)
T Consensus 33 ~VlEIGpG~GaLT~~Ll~~~-----~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 33 NVLEIGPGLGALTEPLLERA-----ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred EEEEECCCCCHHHHHHHHHC-----CEEEEEEECHHHHHHHHHHHCCCCCEEEEECCHHCCCCHHHCCCCEEEECCCC
T ss_conf 69997898778899999606-----95799996889999999750656655999472424751351578889980897